PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2021s0122.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 370aa    MW: 41691.8 Da    PI: 10.0082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2021s0122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-19213262255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r r++lg+f tae+Aa a++ a+  l+g
  Bostr.2021s0122.1.p 213 LYRGVRQRH-WGKWVAEIRLPKN---RSRVWLGTFETAEQAAMAYDTAAYILRG 262
                          59******9.**********965...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-30212272No hitNo description
SMARTSM003801.1E-35213276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-31213271IPR001471AP2/ERF domain
PROSITE profilePS5103222.576213270IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22213270IPR016177DNA-binding domain
PfamPF008475.9E-12214261IPR001471AP2/ERF domain
PRINTSPR003675.2E-11214225IPR001471AP2/ERF domain
PRINTSPR003675.2E-11236252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEATNKELAA FSGQNLKKHT NKHKKKVNME DQFPKIETSF MHDKLLSSGI YGVLSSSTPP  60
QLLGVPIFLE GMKSPLLLPS STPSYFVSPH DELTSTCHQS PVASVPWNFL ESFPQSDQRP  120
DHPSKPPNLT LILKEPKLLE LSQTDSNLIP YHKYIPNSLY QSGQTRNEWV EINKTLTNYP  180
AKGFGNYWLS TTKTQPMKSK TRKVVQTTTP TKLYRGVRQR HWGKWVAEIR LPKNRSRVWL  240
GTFETAEQAA MAYDTAAYIL RGDFAHLNFP NLKHQLKSGS LRCMIASLLE SKIQQISSSQ  300
VSNSPSPPTK VESLEPKNHM KMEPSGEVVM MKKQKSQKEV MEGDGVQLSR MPSLDMDLIW  360
DALSLPHSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21212270160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21212270463ATERF1
3gcc_A2e-21212270463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2021s0122.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440558.10.0PREDICTED: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLR0F9760.0R0F976_9BRAS; Uncharacterized protein
STRINGBostr.2021s0122.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein