PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0410.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 319aa    MW: 36212.8 Da    PI: 7.0356
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.5e-1651110155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d   +n    k+ ++++lg ++ +e Aa+a++ a++k++g
  Bostr.20129s0410.1.p  51 SSYRGVTRHRWTGRYEAHLWDkNGWNEtqtKKgRQVYLGAYDEEEAAARAYDLAALKYWG 110
                           67*******************555566888557*************************98 PP
2AP252.51.2e-16153204155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Bostr.20129s0410.1.p 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 204
                           89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-1751120IPR016177DNA-binding domain
PfamPF008471.6E-1251110IPR001471AP2/ERF domain
CDDcd000184.90E-1151120No hitNo description
PROSITE profilePS5103220.81152118IPR001471AP2/ERF domain
SMARTSM003804.1E-2852124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1652119IPR001471AP2/ERF domain
PRINTSPR003673.5E-65364IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18153214IPR016177DNA-binding domain
CDDcd000182.81E-14153214No hitNo description
PfamPF008471.1E-11153204IPR001471AP2/ERF domain
SMARTSM003801.1E-25154218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17154213IPR001471AP2/ERF domain
PROSITE profilePS5103218.241154212IPR001471AP2/ERF domain
PRINTSPR003673.5E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAKVSRRSKK SMVDDEIRDK TASASESASI VFKSKRKRKS PPQNTPPQRS SSYRGVTRHR  60
WTGRYEAHLW DKNGWNETQT KKGRQVYLGA YDEEEAAARA YDLAALKYWG RDTLLNFPLS  120
TYEEDVKEME GHSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AAIAYDIAAI EYRGLNAVTN FDVSRYLNPS AAANHHNPDK PDSDSKPIRN  240
PNHDPESSDD NESPKSEEII EPSTPPEAIP TRRSFPDDIQ TYFGCQDSGK LATEEDVIFG  300
GFDSFINPGF YNEFDFEP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1173000.0AK117300.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL16-86-I04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429874.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotA0JPZ81e-172AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A1J3CZN20.0A0A1J3CZN2_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGBostr.20129s0410.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-159AP2 family protein