PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0222.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARF
Protein Properties Length: 570aa    MW: 62242.4 Da    PI: 4.9563
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23123224199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+ltpsd+++ g +++p+ +a++          ++ +  +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF
  Bostr.20129s0222.1.p 123 FAKILTPSDANNGGGFSVPRYCADSVfppldfqADPPVQ--KLFITDIHGVVWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVF 209
                           89*********************999*****95444444..8*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                           +  ++s  e++++v+r+
  Bostr.20129s0222.1.p 210 M--RKSADEMFIGVRRA 224
                           *..44788899***997 PP
2Auxin_resp76.76.1e-26280353175
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWp 75 
                           a+++a+++ +FevvY+P a++s+Fvv++e+ve+++++ +++G+R+kma+etedss++++ +G+v+++ +  p  W+
  Bostr.20129s0222.1.p 280 AMNKAAQGLPFEVVYYPTAGWSDFVVRAEDVESSMSMFWTPGTRVKMAMETEDSSRITWfQGIVSSTYQETP--WK 353
                           67999******************************************************9*****9999666..54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-33116225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-29117229IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-20123225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83123225IPR003340B3 DNA binding domain
CDDcd100172.22E-20123219No hitNo description
PfamPF023622.9E-21123224IPR003340B3 DNA binding domain
PfamPF065071.7E-20280353IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSPPSESTAG DVLDRGVDPR IWRACAGASV QIPSLYSRVY YFPEGHVEHC CASSPLISTL  60
PSSTSPVPCF ISSIQLLADP ITDEVFAHLC LQPMSQEQFI PTNFSRFGGY EGDVDDNNKV  120
TTFAKILTPS DANNGGGFSV PRYCADSVFP PLDFQADPPV QKLFITDIHG VVWDFRHIYR  180
GTPRRHLLTT GWSKFVNNKK LIAGDSVVFM RKSADEMFIG VRRAPISSNG GGTSYYGGDE  240
YNGYYNQSSG GVAKEDDGNA KKMFRRTGKG KLTAEAVSEA MNKAAQGLPF EVVYYPTAGW  300
SDFVVRAEDV ESSMSMFWTP GTRVKMAMET EDSSRITWFQ GIVSSTYQET PWKQLQITWD  360
EPEILQNVKR VNPWQVEIVA NATQLHATFP SAKRVKYPQT GGFLSGDDGE ILYSQRGLSS  420
AAAPDPSPYL LSYTTFPAGM QGARHYEFGS YNPTRFIGEN LPQLCTNNFF SPLPGLGKVS  480
NEMNFGSPPS DNLSPNSNST NLSSGNDLVG NRGPISAKAN SIQLFGKIIT VQEPSESGLA  540
ESGLCEEDGS KESSDNETQL YLTHGPQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-621038412360Auxin response factor 1
4ldy_B1e-621038412360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0222.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302016.20.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLR0HYF10.0R0HYF1_9BRAS; Auxin response factor (Fragment)
STRINGBostr.20129s0222.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]