PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.20129s0154.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26080.6 Da PI: 4.8565 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 37 | 87 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ ++g Bostr.20129s0154.1.p 37 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALTIKG 87 79*****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-13 | 37 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-22 | 37 | 97 | No hit | No description |
SMART | SM00380 | 2.8E-36 | 38 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 38 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 38 | 96 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-10 | 39 | 50 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 39 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MTESSITSVK QSSPVQEEED HHHHHRTDNK KRVRPDPGYR GVRMRTWGKW VSEIREPRKK 60 SRIWLGTFST PEMAARAHDA AALTIKGTSA VLNFPELATY LPRPASSSPR DVQAAAAVAA 120 AMDFSSSSAP VVSDPTSVVP ETHLSSSSYS TSTSSSLSPS SEEAASTAEE LSEIVELPSL 180 ETSYDESWSE FVYVDSAYPP SSPWYINNCY SFYYHSDENG ISMGEPFESS NFGPLFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 39 | 95 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00245 | DAP | Transfer from AT1G77200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.20129s0154.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004260 | 0.0 | AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence. | |||
GenBank | AY560875 | 0.0 | AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471905.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor ERF037 | ||||
Swissprot | O80654 | 1e-116 | ERF37_ARATH; Ethylene-responsive transcription factor ERF037 | ||||
TrEMBL | D7KUG7 | 1e-118 | D7KUG7_ARALL; Uncharacterized protein | ||||
STRING | Bostr.20129s0154.1.p | 1e-171 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77200.1 | 1e-101 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.20129s0154.1.p |