PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0127.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 520aa    MW: 59177.5 Da    PI: 9.7982
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.62.2e-3046130187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++lea
  Bostr.20129s0127.1.p  46 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELEA 130
                           8********************************************************************975544..6******985 PP
2trihelix107.21.1e-33394479187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k e+ aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  Bostr.20129s0127.1.p 394 RWPKTEIEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESSKKR-PLDSKTCPYFHQLEA 479
                           8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.04443105IPR001005SANT/Myb domain
CDDcd122031.64E-2445110No hitNo description
PfamPF138372.1E-2045130No hitNo description
PROSITE profilePS500907.00445103IPR017877Myb-like domain
SMARTSM007175.1E-4391453IPR001005SANT/Myb domain
CDDcd122039.12E-26393458No hitNo description
PROSITE profilePS500907.422393451IPR017877Myb-like domain
PfamPF138372.1E-23393480No hitNo description
Gene3DG3DSA:1.10.10.607.3E-4393450IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSGNSSGLLE SSGGGVSGSG EEEKDTKMEE TGEGAGGEGA GGGGNRWPRP ETLALLRIRS  60
EMDKAFRDST LKAPLWEEIS RKMMELGYKR SAKKCKEKFE NVYKYHKRTK EGRTGKSEGK  120
TYRFFEELEA FETLNSYQPE PESQPAKSSA TVATAATTTS LIPWISSNNP STEKGYLPLK  180
HHHQVSVQPI TTNPTFLAKQ PSSTTPFPFS QPPISNDLMN NVSSLNLFSS STSSSTACDE  240
EEDDHHQGKR SRKRRKYWKG LFTKLTKELM EKQEKMQKRF LETLENREKE RISREEAWRI  300
QEIARINREH ETLIHERSNA AAKDAAIISF LHKISGGQPQ QLQQQNHKPS QRKQYESDHS  360
ITFESKEPRP ILLDTTMKMG KYDTNHSVPP SSSRWPKTEI EALIRIRKNL EANYQENGTK  420
GPLWEEISAG MRRLGYNRSA KRCKEKWENI NKYFKKVKES SKKRPLDSKT CPYFHQLEAL  480
YNDRNKSGAM PLPLALPPTV TPQRQLLLSQ ETQTELETD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0127.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0871170.0AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177815.10.0Duplicated homeodomain-like superfamily protein
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A178W7Z20.0A0A178W7Z2_ARATH; GT2
STRINGBostr.20129s0127.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein