PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0125.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 411aa    MW: 47704.7 Da    PI: 7.8644
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0125.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix735.3e-23104200186
              trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                           +W +++v+++i+a ++++e+++ ++          +kk++W++vs+++ erg+++s++qC++k+++lnkrykk++e+ +++ ++e++++
  Bostr.20129s0125.1.p 104 KWLDKMVKLMITALSYIGEDSGLDNngyarkfavlQKKGKWKSVSRVIGERGYRVSQQQCEDKFNDLNKRYKKLNEMLGRGtSCEVVEN 192
                           7********************97766788889999**********************************************669****9 PP

              trihelix  79 cpyfdqle 86 
                            +++d+++
  Bostr.20129s0125.1.p 193 PALLDKID 200
                           99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-18102226No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEGNCSQGGI VRGENSYGRF DSQGSMRDLR PNAMNQNQDQ DSGLPFTMMV ARQTCVQNLP  60
TTDQYNNGER GKNPVSEEDE LCLSCDVHNE SNKSKKNSPW QRVKWLDKMV KLMITALSYI  120
GEDSGLDNNG YARKFAVLQK KGKWKSVSRV IGERGYRVSQ QQCEDKFNDL NKRYKKLNEM  180
LGRGTSCEVV ENPALLDKID YLNDKEKNEV RKIMSSKHLF YKEMCSYHNG NRLHLPHDPA  240
LQRSLHLLML RSRDDHDNDE HGKHQNEVFD DEDDLDGYEE HNLSRKDYIG VHDGALGDRP  300
LKRLRQSQSH EDVGHPNKGY VSHLPGSQAD VNRGIESKQL IESKYLELEG RKLQIQAELM  360
ELERQQFKWE RFSKKRDQKL EKMRMENERM KLVNERMTLE LKRIELGAKL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAPTransfer from AT1G76870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0125.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935391e-171AB493539.1 Arabidopsis thaliana At1g76870 mRNA for hypothetical protein, partial cds, clone: RAAt1g76870.
GenBankAC0792831e-171AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBankCP0026841e-171CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887659.10.0uncharacterized protein LOC9325170
TrEMBLD7KTX80.0D7KTX8_ARALL; Uncharacterized protein
STRINGBostr.20129s0125.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.10.0