PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0797.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 390aa    MW: 44274.8 Da    PI: 9.9947
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0797.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34.2e-233582350
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          + ++s + +++++Rr++++KKA+ELS+LC++ev+vi ++s+g+l++++
  Bostr.19424s0797.1.p 35 SASSSSKATSLIRRRKTVFKKAHELSILCGIEVCVICYGSDGELKTWP 82
                          56889999***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-81484IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.5593785IPR002100Transcription factor, MADS-box
PfamPF003196.4E-153781IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-1738113IPR002100Transcription factor, MADS-box
CDDcd002669.23E-1945109No hitNo description
PRINTSPR004041.6E-54762IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-56283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVSSSSCYPS SSSSTKKKTT NFSQIQQTLF KKPNSASSSS KATSLIRRRK TVFKKAHELS  60
ILCGIEVCVI CYGSDGELKT WPGDREKVKA MARRYGALSE TKRRKRSVAF HEFLEMVNKD  120
DSKKKKKNKV RRVSKVKYPV WDPRFDNYSV EQLTGLIQSL ERNLTRIQHR IHAVVEGQGQ  180
RKIQYRNMGN QELMMTTTMN HLQQQSNQVS MFLFNHGNGN ISQIPVSVSA LNQGQYLAPI  240
PPELMIYPNS DVGNYSGSLG NMNMLTCDNI NNINDFSKQI EQNSRVESYS SLLGAHRYGI  300
NEFENTNMYT RNNFNVEDYS GLLGVKGTAT NEFQSMNMYD YNNNNNSVNA NGLSHQLVQF  360
PTKQQYRAFN SDQSGNNIWS LYDLSQSLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103125RKRSVAFHEFLEMVNKDDSKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0797.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266540.0AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11.
GenBankBT0295490.0BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188495.10.0AGAMOUS-like 103
SwissprotQ9LSB20.0AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A178V6E81e-178A0A178V6E8_ARATH; AGL103
STRINGBostr.19424s0797.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-160AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]