PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0764.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 210aa MW: 24131.6 Da PI: 7.8039 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.3e-17 | 30 | 120 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk +ps v k+ +++p kf++ g+k + +tle++ g + ++kl ++ ++++++ +GW+eF+ka+ +keg f++F+++++s+ Bostr.19424s0764.1.p 30 FFKLVLPSTVKKNM-MRIPPKFVKLQGSK--LPEVVTLETPVGFKRSIKL--KRIGQEIWIHEGWSEFAKAHSIKEGHFLLFEYNENSS 113 88989899888886.********666655..7889***************..********************************99999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v +f+ Bostr.19424s0764.1.p 114 F--RVIIFN 120 9..777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-24 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-23 | 25 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.72E-18 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-20 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-16 | 30 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVTTRKTKAR VTFSSHRRPP QDPESPLKTF FKLVLPSTVK KNMMRIPPKF VKLQGSKLPE 60 VVTLETPVGF KRSIKLKRIG QEIWIHEGWS EFAKAHSIKE GHFLLFEYNE NSSFRVIIFN 120 GSACEIEYPL DVVHISDSDD DIIQITDKEF IGTQGKREND QSVKGGDTEH KPNKRPRDIE 180 FDKILHDVDA LNSILVLKEE EEDERVFRG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0764.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229681 | 0.0 | AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20. | |||
GenBank | BT006139 | 0.0 | BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds. | |||
GenBank | BT008541 | 0.0 | BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887460.1 | 1e-125 | B3 domain-containing protein At3g18960 | ||||
Swissprot | Q84R27 | 1e-113 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | A0A178VGT7 | 1e-110 | A0A178VGT7_ARATH; Uncharacterized protein | ||||
TrEMBL | A0A1J3J149 | 1e-110 | A0A1J3J149_NOCCA; B3 domain-containing protein (Fragment) | ||||
STRING | Bostr.19424s0764.1.p | 1e-152 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-115 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0764.1.p |
Publications ? help Back to Top | |||
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