PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0744.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 263aa MW: 30190.1 Da PI: 9.4206

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0744.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.5	7.4e-16	125	214	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +++s+v+ +l lp +f+++h +k ++ ++tl de+ +++ k+ +k++ l++GW++F +++L +gD vvF+l+ + Bostr.19424s0744.1.p 125 FVKPMLQSHVTGGFWLGLPHHFCKAHL-PK-RDEMMTLVDEEDEEFVAKYLAEKNG----LSGGWRGFSIDHQLVDGDAVVFHLITPTM 207 89********************995.33.5569***********666666....*********************997655 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v ++r Bostr.19424s0744.1.p 208 F--KVYIIR 214 5..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-19	116	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-24	118	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.27E-25	123	214	No hit	No description
SMART	SM01019	2.9E-20	125	216	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.969	125	216	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-14	125	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVDSELSYEQ IRLNRVEENK KRMEELNLNK LAQSLGVSSS PKPSPAKPRT VRMPSDFLEV 60 RRSSRAKGPP PSYKEFGLEP LERPRRSYQR RDLLNRVYAS DEARMYAFDR AEKLQSSLDP 120 EFPSFVKPML QSHVTGGFWL GLPHHFCKAH LPKRDEMMTL VDEEDEEFVA KYLAEKNGLS 180 GGWRGFSIDH QLVDGDAVVF HLITPTMFKV YIIRVNDDAN NDSDGNEEYK ESDIKSNKKQ 240 EENVSVARQL RSNGKRKRGG RK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0744.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493621	0.0	AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBank	DQ487561	0.0	DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466051.1	1e-158	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-144	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	R0I040	1e-155	R0I040_9BRAS; Uncharacterized protein
STRING	Bostr.19424s0744.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-134	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0744.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]