PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.19424s0712.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 269aa MW: 28783.1 Da PI: 5.5745

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.19424s0712.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	6.9e-05	152	192	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Bostr.19424s0712.1.p 152 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 192 678889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.877	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-11	145	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-4	150	196	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-7	150	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGDTAEDHDE LAMGEAEGVT SFSELLMFSD GVLSSSDHQR EGSGGDGGED SIGFVFSGKT 60 GSRMLCFSEG YQNDEASLFL EPSLPSEVSV ADPSCIKIDC KNSNDACMLD KSTKSSNKKR 120 TGMGNEQDPD HNRKPGKKCK RNQDKSSVGI AKVRKERLGE RIAALQQLVS PYGKTDAASV 180 LHEAMGYIKF LQDQIQVLCS PYLINHSHDG GVVTGDVMAA MKAKDLRSRG LCLVPVSSTV 240 HVENSNGADF WSPATMGHTT SPSLHQGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.19424s0712.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084520	0.0	AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_566639.1	1e-171	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9LT67	1e-172	BH113_ARATH; Transcription factor bHLH113
TrEMBL	D7L9Z7	1e-169	D7L9Z7_ARALL; Uncharacterized protein
STRING	Bostr.19424s0712.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-167	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.19424s0712.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]