PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0675.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31899.7 Da PI: 8.0759 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.8e-09 | 7 | 55 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + rE+ RR+++N+ f eL +l + +K++Ka+iL+ +v+ +k+L Bostr.19424s0675.1.p 7 KSQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTVQLLKEL 55 5566779******************9987....69***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.268 | 5 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-13 | 5 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-12 | 5 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.97E-6 | 6 | 59 | No hit | No description |
Pfam | PF00010 | 9.1E-7 | 7 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-6 | 11 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN 60 KLKSEYAALT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMSP WGAAMDHTVM 120 MAPPPSFPYP MPMAMPPGSI PMHPSMPSYT YFGNQNPNMI PAPCPTYMPY MPPNTVVEQQ 180 SVHIPQNPGN RSREPRAKVS RESRSEKAED SDEVATQLEL KTPGSTSDKD TLQRPEKTKR 240 CKRNNNNNST EESSHSSKCS SSPSIRDHSS SSSVAGGQKP EDAK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0675.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317507 | 0.0 | AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11. | |||
GenBank | AY065107 | 0.0 | AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds. | |||
GenBank | AY081703 | 0.0 | AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001326099.1 | 1e-178 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9LT23 | 1e-178 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A1I9LN90 | 1e-177 | A0A1I9LN90_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | Bostr.19424s0675.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2353 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 1e-160 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0675.1.p |
Publications ? help Back to Top | |||
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