PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0211.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 276aa    MW: 30292.8 Da    PI: 7.3951
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0211.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.7e-20199233135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  Bostr.19424s0211.1.p 199 CQHCGAEKTPQWRAGPSGPKTLCNACGVRYKSGRL 233
                           *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-17193243IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.281196229IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15196256No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15197231IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.16E-14198245No hitNo description
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
PfamPF003201.9E-17199233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEMESFMDDL LNFSVPEQEE DDEEDMQPPR NITRRKTGLR QTDSFGLFNP DDPGVVEEED  60
LEWISNKDAF PVIETFVGVL PPEHFRVTSP EREATEENKL SPVSVLETSS HSSTTTTTTT  120
SNSSGGSNGS TAVATTATTT TTLMSCCLSF KAPAKARSKR RRTGRRDLRV LWTGNEQGGI  180
QKKKTATVTA AAVIIGRKCQ HCGAEKTPQW RAGPSGPKTL CNACGVRYKS GRLVPEYRPA  240
NSPTFTAELH SNSHRKIVEM RKQYQSGDGD RKDCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0211.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0244970.0BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds.
GenBankY136480.0Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298301.11e-139GATA transcription factor 1 isoform X1
SwissprotQ8LAU91e-138GATA1_ARATH; GATA transcription factor 1
TrEMBLR0HN961e-138R0HN96_9BRAS; Uncharacterized protein
STRINGBostr.19424s0211.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-118GATA transcription factor 1