PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0134.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 303aa    MW: 34148.3 Da    PI: 9.8292
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.71.5e-2364144286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           Wt++e+l+Lie ++e++++++rg+lk ++Wee++ ++ ++ g+ rs++qC++k+e+++kr++ ++++++       s +p+++q+e
  Bostr.19424s0134.1.p  64 WTHDETLLLIESTKEKWNAIGRGALKSTQWEEIAVAVsARSGVDRSATQCRHKIEKMRKRFRSERQSMGPI-----SIWPFYSQME 144
                           ***********************************998899****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-1964146No hitNo description
PROSITE profilePS500906.49364121IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MATPSPTSSP PSDSNPNSAA TLPHQKQPPS PPPTNPSSPP PHITVVALAA STSAVARKTQ  60
PVLWTHDETL LLIESTKEKW NAIGRGALKS TQWEEIAVAV SARSGVDRSA TQCRHKIEKM  120
RKRFRSERQS MGPISIWPFY SQMEELDSNP APISARPLTR LPPNSNNHYE EEDEEEDNYE  180
EEEEEDERQS KSRSINYILR RPGTVNRFAG VGGGLLSWGQ RERSKRKRNG EDGAERRRKG  240
ARAVAAEIRS FAERVMVMEK KKMEFAKETV RLRKEMEIRR IDLIQSSQAQ LLQFLNTAFD  300
SF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224238KRKRNGEDGAERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0134.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286090.0AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8.
GenBankAK1181570.0AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19.
GenBankBT0054910.0BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298195.11e-168trihelix transcription factor ASIL1
TrEMBLR0I4461e-167R0I446_9BRAS; Uncharacterized protein
STRINGBostr.19424s0134.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-142Trihelix family protein