PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19046s0061.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 59978.4 Da PI: 4.5883 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 443.9 | 1.1e-135 | 173 | 533 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 lv++L++cAea+++++l+la+al++r+ +la+++ +m ++a+yf++ALa+r++r ++++ ++ s e + f+e +P Bostr.19046s0061.1.p 173 LVHALVACAEAIQQENLNLADALVKRVGTLAASQVGAMGKVATYFAQALARRIYR---------DYTAET-DDGSFEEVLQMHFYESCP 251 689****************************************************.........222332.334555455557****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +lkf+h+taNqaIleav +++rvH+iD++++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++++++l+++g++La+fA+++gv+fef Bostr.19046s0061.1.p 252 YLKFAHFTANQAILEAVTTSRRVHVIDLGLNQGIQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNIGVEFEF 340 ***************************************************************************************** PP GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 + l+a++l+dle+++++++p E+l+Vn+v++lhrll++s+s+e+ +L +vk ++P +++vveqea+hn+ Fl+rf eal+yys+ Bostr.19046s0061.1.p 341 KGLAAESLSDLEPDMFETRPeSETLVVNSVFELHRLLARSGSIEK----LLATVKAIKPSIITVVEQEANHNGIVFLDRFNEALHYYSS 425 ********************9************************....**************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354 lfdsle +++ s++r ++++++lgr+i nvva+eg++r+erhetl++Wr r+++ GF p++l+++a kqa++ll+ ++ +dgyrvee+ Bostr.19046s0061.1.p 426 LFDSLEDSYSLPSQDR-VMSEVYLGRQILNVVAAEGSDRVERHETLSQWRIRMKSGGFDPIHLGSSAFKQASMLLSVFAtGDGYRVEEN 513 ********87777666.567778****************************************************************** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +g+l+lgW++rpL+++S+W+ Bostr.19046s0061.1.p 514 DGCLMLGWQTRPLITTSVWK 533 *******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 2.3E-39 | 36 | 107 | No hit | No description |
Pfam | PF12041 | 4.5E-34 | 36 | 101 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 66.569 | 147 | 512 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-133 | 173 | 533 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MKRGHGETWD PPPSRSGEGP SMVDKKKAAD DNNMDDELLA VLGYKVRSSE MAEVAQKLEQ 60 LEMVLSNDDA GSTVLNETVH YNPSDLSTWV ESMLSELNNP ESSDLDPTRS CVDRSEYDLR 120 AIPGLSAFPK EEEEVFDEVA SSKRIRLGSW CESPGESTRS VVLVDSQETG VRLVHALVAC 180 AEAIQQENLN LADALVKRVG TLAASQVGAM GKVATYFAQA LARRIYRDYT AETDDGSFEE 240 VLQMHFYESC PYLKFAHFTA NQAILEAVTT SRRVHVIDLG LNQGIQWPAL MQALALRPGG 300 PPSFRLTGIG PPQTENSDSL QQLGWKLAQF AQNIGVEFEF KGLAAESLSD LEPDMFETRP 360 ESETLVVNSV FELHRLLARS GSIEKLLATV KAIKPSIITV VEQEANHNGI VFLDRFNEAL 420 HYYSSLFDSL EDSYSLPSQD RVMSEVYLGR QILNVVAAEG SDRVERHETL SQWRIRMKSG 480 GFDPIHLGSS AFKQASMLLS VFATGDGYRV EENDGCLMLG WQTRPLITTS VWKLAGAAES 540 RR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-65 | 180 | 532 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-65 | 180 | 532 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-65 | 180 | 532 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a major GA-response repressor of seed germination, including seed thermoinhibition. Promotes the biosynthesis of abscisic acid (ABA), especially in seed coats to maintain seed dormancy. Delays flowering and adult leaf production. Also regulates the floral development, petal, stamen and anther development, by repressing the continued growth of floral organs. Its activity is probably regulated by other phytohormones such as auxin and ethylene. Involved in the regulation of seed dormancy and germination, including glucose-induced delay of seed germination. Promotes salt tolerance. Acts as a repressor of positive regulators of trichome initiation. Required during the flagellin-derived peptide flg22-mediated growth inhibition. Contributes to the susceptibility to the biotrophic pathogen P.syringae pv. tomato and to the resistance to the necrotrophic pathogens B.cinerea A.brassicicola, probably by repressing the SA-defense pathway and preventing cell death. Prevents stress-induced reactive oxygen species (ROS) accumulation (e.g. salt stress) by acting on the ROS scavenging system, and delays ROS-induced cell death, thus promoting stress tolerance. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591, ECO:0000269|PubMed:16400150, ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:17141619, ECO:0000269|PubMed:17384169, ECO:0000269|PubMed:17704233, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:18450450, ECO:0000269|PubMed:18450451, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:20093430, ECO:0000269|PubMed:20956298}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19046s0061.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated transiently following seed imbibition to decline rapidly as germination proceeds; this induction is delayed at supraoptimal temperature conditions (e.g. 34 degrees Celsius). Accumulates in seed coats of dormant seeds where germination does not occur after imbibition. Increased levels upon abscisic acid (ABA) treatment. Down-regulated by norflurazon (NF), an ABA biosynthesis inhibitor. Induced by stress such as glucose, salt or mannitol treatment. {ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:16916886, ECO:0000269|PubMed:17384169, ECO:0000269|PubMed:18162586, ECO:0000269|PubMed:18450450, ECO:0000269|PubMed:18941053, ECO:0000269|PubMed:20956298}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009895 | 0.0 | AC009895.4 Arabidopsis thaliana chromosome III BAC T21P5 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | GQ177758 | 0.0 | GQ177758.1 Arabidopsis thaliana ecotype Ag-0 RGL2 gene, complete sequence. | |||
GenBank | GQ177760 | 0.0 | GQ177760.1 Arabidopsis thaliana ecotype C24 RGL2 gene, complete sequence. | |||
GenBank | GQ177761 | 0.0 | GQ177761.1 Arabidopsis thaliana ecotype Sorbo RGL2 gene, complete sequence. | |||
GenBank | GQ177765 | 0.0 | GQ177765.1 Arabidopsis thaliana ecotype Bay-0 RGL2 gene, complete sequence. | |||
GenBank | GQ177766 | 0.0 | GQ177766.1 Arabidopsis thaliana ecotype Br-0 RGL2 gene, complete sequence. | |||
GenBank | GQ177767 | 0.0 | GQ177767.1 Arabidopsis thaliana ecotype Ct-1 RGL2 gene, complete sequence. | |||
GenBank | GQ177772 | 0.0 | GQ177772.1 Arabidopsis thaliana ecotype Kas-2 RGL2 gene, complete sequence. | |||
GenBank | GQ177773 | 0.0 | GQ177773.1 Arabidopsis thaliana ecotype Ll-0 RGL2 gene, complete sequence. | |||
GenBank | GQ177775 | 0.0 | GQ177775.1 Arabidopsis thaliana ecotype Ms-0 RGL2 gene, complete sequence. | |||
GenBank | GQ177781 | 0.0 | GQ177781.1 Arabidopsis thaliana ecotype Nd-1 RGL2 gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888663.1 | 0.0 | DELLA protein RGL2 | ||||
Swissprot | Q8GXW1 | 0.0 | RGL2_ARATH; DELLA protein RGL2 | ||||
TrEMBL | D7L0H6 | 0.0 | D7L0H6_ARALL; Uncharacterized protein | ||||
STRING | Bostr.19046s0061.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 0.0 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19046s0061.1.p |