PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19046s0011.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 470aa    MW: 52063.8 Da    PI: 4.6796
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19046s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35251162102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+ +++++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Bostr.19046s0011.1.p  25 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKHFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQ 104
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ l++i r+k 
  Bostr.19046s0011.1.p 105 KQILKSIVRRKP 116
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.25E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGSICESVVP TANSSTAVMS SIPPFLSKTY DMVDDPLTDD VVSWSSGNNS FVVWNVPEFA  60
KHFLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGQKQILKS IVRRKPAQVQ  120
PQQQPQVQHS SVGACVEVGK FGLEEEVERL QRDKNVLMQE LVRLRQQQQV TEHHLQNVGQ  180
KVNVMEQRQQ QMMSFLAKAV QSPGFLNQFA QQNNDANRNI SESNKKRRLP GEDQTNSGSH  240
GVNGLSRQIV RYQSSMNDAA NTMLQQIQQM SNSPGHESLT NNHGSFLLGD VPNSNLSDNG  300
SSSNGSSGVT LADVSSNPAG LYPAMKYHEP CETNQVLETN LPYPQADLIA PKQGASASGS  360
SNSDFVGCET DNGECLDPIM AVLDGPIELE ADSINELLPE VQDSFWEQFL GESPVIGDTD  420
ELISGSVENE LIMEHLELQS SLSNVWNKNQ QMNHLTEQMG LLTSDALRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-262011424129Heat shock factor protein 1
5d5v_B4e-262011424129Heat shock factor protein 1
5d5v_D4e-262011424129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19046s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0263650.0BT026365.1 Arabidopsis thaliana At3g02990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297607.10.0heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLR0HYA00.0R0HYA0_9BRAS; Uncharacterized protein
STRINGBostr.19046s0011.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]