PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.18473s0162.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | LBD | ||||||||
Protein Properties | Length: 357aa MW: 40161.6 Da PI: 5.7158 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.7 | 1.2e-35 | 31 | 129 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck +rr+C ++C+lapyfpaeqpk f+nvh+lFG+++++k+l+ l+e+++++am+s+++++ +r r Pv+G++gv ++lq + Bostr.18473s0162.1.p 31 ACASCKSQRRRCIRNCPLAPYFPAEQPKLFQNVHRLFGVRRIVKILELLDENQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWM 119 7**************************************************************************************** PP DUF260 90 lkaelallke 99 +++el++++ Bostr.18473s0162.1.p 120 AEEELKAVNL 129 *****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.944 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-32 | 31 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSHRGPGERF LHLLIAVIIV LMTLKGGTSG ACASCKSQRR RCIRNCPLAP YFPAEQPKLF 60 QNVHRLFGVR RIVKILELLD ENQKPEAMKS IIFQSYVRDR SPVHGCLGVT QQLQYMIWMA 120 EEELKAVNLQ LQFYRSQQQN GQNQNHNHNH NNNQMIHELG SDNKPQEDVT SQLDLGMGLN 180 VNNNHGNVVT PFFSPLPVSE TQQPQMSYTY SCSEVNNNGY SPPAYNTDSS KEILTDSNNV 240 WGGQNRFLYN NNNGGVFSNQ NESCHEMKSN NGVMAIQSQL GNLKMVSNHQ QEEEEDPHEY 300 DEIHQFLEMI DDRQSIADSK EAYASSSGES LKEQTGESGE NELKSAATCF SLTSLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-23 | 27 | 141 | 7 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-23 | 27 | 141 | 7 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.18473s0162.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473862 | 0.0 | AB473862.1 Arabidopsis thaliana ASL29 mRNA for ASYMMETRIC LEAVES2-like 29 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292170.1 | 0.0 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 1e-160 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | R0HMD7 | 0.0 | R0HMD7_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.18473s0162.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-151 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.18473s0162.1.p |
Publications ? help Back to Top | |||
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