PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.17775s0015.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 299aa    MW: 33847.7 Da    PI: 6.4209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.17775s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.93.8e-183586255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          r++h+e E+rRR +iN++f+ L +++P++  ++++K +Ka+ L +++eYI+ Lq
  Bostr.17775s0015.1.p 35 RAKHSETEQRRRCKINERFQSLMDIIPQN--QNDQKRDKASFLLEVIEYIHFLQ 86
                          899*************************6..4********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-2031113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-173190No hitNo description
PROSITE profilePS5088816.713385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-2135106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-153586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-143991IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNSPDLVEQL EADVYSNLPS RNDTSTGRRN RSSCRAKHSE TEQRRRCKIN ERFQSLMDII  60
PQNQNDQKRD KASFLLEVIE YIHFLQEKVQ MYEASHQMWY QTPTKLIPWR NNHGSVAEVA  120
DHPQIVNSFS SNDKVATSSG LLLDMQNSVD SDIYSAVGTK ILEHSPISAV SSYVPTEPLL  180
QFGQHDFWQP KPNCGSIKCN TDELENLDGK ISASLSTVCS QRVLHTLTEA LKSSGVNMSE  240
TMISVQLSLR KRPDREYSLT AFASEDKCDS IADEEGNSPT ETRSYCKDLN HSQKRIRR*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.17775s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304990.0AJ630499.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g38860.
GenBankBT0331310.0BT033131.1 Arabidopsis thaliana unknown protein (At5g38860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285112.20.0transcription factor BIM3
SwissprotQ9FMB60.0BIM3_ARATH; Transcription factor BIM3
TrEMBLD7MJT91e-172D7MJT9_ARALL; Uncharacterized protein
STRINGBostr.17775s0015.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161311114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.10.0BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]