PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.17775s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bZIP | ||||||||
Protein Properties | Length: 163aa MW: 18927.1 Da PI: 7.197 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.5 | 3.3e-14 | 71 | 120 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++rrk++NRe+ArrsR RK+ +++eL v L +eN++L +l++ + Bostr.17775s0009.1.p 71 RKQRRKISNRESARRSRMRKQRQVDELWSQVMWLRNENHQLLHKLNHVLE 120 689***************************************99998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.4E-13 | 67 | 131 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.737 | 69 | 132 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.5E-12 | 71 | 121 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.9E-11 | 71 | 144 | No hit | No description |
Pfam | PF00170 | 3.4E-12 | 71 | 121 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.56E-17 | 72 | 122 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 74 | 89 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MQPSMNIFSL HGCPPSYLSH FPTSTPFCVN GQNPNPFYSF QTGVNSTQFM SLSNSTSDEA 60 EENHSDIINE RKQRRKISNR ESARRSRMRK QRQVDELWSQ VMWLRNENHQ LLHKLNHVLE 120 SHEKVIEENA QLKGETSELK NMISDMQLQN QSPFSCFRDD VV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 90 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00533 | DAP | Transfer from AT5G38800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.17775s0009.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB009048 | 1e-144 | AB009048.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6. | |||
GenBank | CP002688 | 1e-144 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010496567.1 | 1e-107 | PREDICTED: basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 9e-98 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | R0H248 | 1e-100 | R0H248_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.17775s0009.1.p | 1e-118 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3112 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38800.1 | 1e-100 | basic leucine-zipper 43 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.17775s0009.1.p |
Publications ? help Back to Top | |||
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