PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.1774s0019.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

TCP

Protein Properties

Length: 356aa MW: 37405.4 Da PI: 8.5511

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.1774s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.2	1.4e-38	48	146	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 +++k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ + Bostr.1774s0019.1.p 48 TPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPPS 137 789******************************************************************999889999999997777633 PP TCP 91 aksaakskk 99 ++++ + + Bostr.1774s0019.1.p 138 KSFHSGRAP 146 333332222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.6E-36	54	155	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.56	54	108	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MESHQNNNTE HHHQQTSTGS AHMVPFMGPI SSSISATTTT TTVSATKTPA KRPSKDRHIK 60 VDGRGRRIRM PAICAARVFQ LTRELQHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST 120 LNVSLRSSGS TLSAPPSKSF HSGRAPQNTA VFGFQQQLYH PHHIMTDSSS LPKSFRQEDL 180 FKDPNSLDQE PGSSSPKLGS EAPDQDPGLT RSRTQNMIPP MWAVAAPTPA STNGGGSAFW 240 MLPVGGGGGP ANVQDPSQHM WAFNSGHYPG RIGSVQLGSM LVQQAAVGGQ LGLSAAESNN 300 LGLFSGGEGG GDGVYGGGGR VGLGMSLEQK PQRHQQHQVS DTHGDQNPTT IAGSP*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MESHQNNNTE HHHQQTSTGS AHMVPFMGPI SSSISATTTT TTVSATKTPA KRPSKDRHIK  60
VDGRGRRIRM PAICAARVFQ LTRELQHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST  120
LNVSLRSSGS TLSAPPSKSF HSGRAPQNTA VFGFQQQLYH PHHIMTDSSS LPKSFRQEDL  180
FKDPNSLDQE PGSSSPKLGS EAPDQDPGLT RSRTQNMIPP MWAVAAPTPA STNGGGSAFW  240
MLPVGGGGGP ANVQDPSQHM WAFNSGHYPG RIGSVQLGSM LVQQAAVGGQ LGLSAAESNN  300
LGLFSGGEGG GDGVYGGGGR VGLGMSLEQK PQRHQQHQVS DTHGDQNPTT IAGSP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.1774s0019.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397460.1	1e-175	transcription factor TCP23
Swissprot	Q9LQF0	1e-166	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A178W532	0.0	A0A178W532_ARATH; TCP23
STRING	Bostr.1774s0019.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-163	TCP family protein

Link Out ? help Back to Top
Phytozome	Bostr.1774s0019.1.p