PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0334.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25636.8 Da    PI: 10.0256
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0334.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.4e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqvtfskRr g++KKA+ELSvLCda+va ++fs++g+lyeyss
  Bostr.15774s0334.1.p  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAVVFSQSGRLYEYSS 59
                          68***********************************************96 PP
2K-box65.32.1e-22851701196
                 K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                           e+  ++l++e++++ k+i+ L+   R+l+G++L+s+s+ eLq++ +q+eksl+ +Rs+K el+ +q+e+l++ke+el +e k+L +
  Bostr.15774s0334.1.p  85 ERYLQELKKEMDRMVKKIDHLEVLRRKLMGQGLGSCSVAELQEIDTQIEKSLRLVRSRKAELYADQLEKLKQKERELLNERKRLCE 170
                           566899**************************************************************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.328161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-32378IPR002100Transcription factor, MADS-box
CDDcd002659.16E-42375No hitNo description
PRINTSPR004044.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.81888179IPR002487Transcription factor, K-box
PfamPF014863.3E-2189171IPR002487Transcription factor, K-box
Gene3DG3DSA:3.30.70.8906.3E-493133IPR013750GHMP kinase, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAVVFSQ SGRLYEYSSS  60
EMEKIIERYG KFSNDFFVAE RPQVERYLQE LKKEMDRMVK KIDHLEVLRR KLMGQGLGSC  120
SVAELQEIDT QIEKSLRLVR SRKAELYADQ LEKLKQKERE LLNERKRLCE EQIKERLMRP  180
VVPLTLQLIY DKGKTEGGGR TKHSSEVETD LFIGLPVTRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-20173173MEF2 CHIMERA
6byy_B7e-20173173MEF2 CHIMERA
6byy_C7e-20173173MEF2 CHIMERA
6byy_D7e-20173173MEF2 CHIMERA
6bz1_A9e-20173173MEF2 CHIMERA
6bz1_B9e-20173173MEF2 CHIMERA
6bz1_C9e-20173173MEF2 CHIMERA
6bz1_D9e-20173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0334.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412200.0AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281070.11e-136MADS-box protein AGL71 isoform X1
RefseqXP_023643169.11e-136MADS-box protein AGL71 isoform X1
SwissprotQ9LT931e-122AGL71_ARATH; MADS-box protein AGL71
TrEMBLR0GS211e-135R0GS21_9BRAS; Uncharacterized protein
STRINGBostr.15774s0334.1.p1e-157(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-123AGAMOUS-like 71