PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G51870.3 | ||||||||
Common Name | AGL71 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25507.5 Da PI: 9.9977 | ||||||||
Description | AGAMOUS-like 71 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+l+eyss AT5G51870.3 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 65.5 | 1.9e-22 | 85 | 171 | 11 | 97 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+ ++l+ e++++ k+i+ L+ +R+llG++L+s+s+ eLq++ +q+eksl+ +Rs+K el+ +q+++l++ke+el +e k+L ++ AT5G51870.3 85 ERYLQELKMEIDRMVKKIDLLEVHHRKLLGQGLDSCSVTELQEIDTQIEKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLLEE 171 566899***************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.272 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-32 | 3 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.79E-42 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 7.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.4 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.8E-21 | 89 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS 60 QMEKIIDRYG KFSNAFYVAE RPQVERYLQE LKMEIDRMVK KIDLLEVHHR KLLGQGLDSC 120 SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLLE EQNRERLMRP 180 VVPATLQICD KGNTEGGHRT KHSSEVETDL FIGLPVTRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.29655 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 248374_at | 0.0 | ||||
Expression Atlas | AT5G51870 | - | ||||
AtGenExpress | AT5G51870 | - | ||||
ATTED-II | AT5G51870 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G51870.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G48150 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G51870 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141220 | 0.0 | AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190517.2 | 1e-159 | AGAMOUS-like 71 | ||||
Swissprot | Q9LT93 | 1e-141 | AGL71_ARATH; MADS-box protein AGL71 | ||||
TrEMBL | F4KEP6 | 1e-158 | F4KEP6_ARATH; AGAMOUS-like 71 | ||||
STRING | AT5G51870.3 | 1e-158 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT5G51870.3 |
Entrez Gene | 835262 |
iHOP | AT5G51870 |
wikigenes | AT5G51870 |