PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15774s0093.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 305aa    MW: 35287.4 Da    PI: 5.4235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15774s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.2e-182875148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Bostr.15774s0093.1.p 28 RGPWTVEEDLELINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                          89********************************************97 PP
2Myb_DNA-binding50.64.4e-1681124146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Bostr.15774s0093.1.p  81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1022379IPR017930Myb domain
SuperFamilySSF466894.39E-3125122IPR009057Homeodomain-like
SMARTSM007174.5E-162777IPR001005SANT/Myb domain
PfamPF002496.9E-172875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-232982IPR009057Homeodomain-like
CDDcd001674.00E-123075No hitNo description
SMARTSM007172.9E-1480128IPR001005SANT/Myb domain
PROSITE profilePS5129418.37880130IPR017930Myb domain
PfamPF002497.3E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2283129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDDKARSLKI NKNMEDFTNV EEEMDLRRGP WTVEEDLELI NYIATHGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLRCDVNSQ QFKDTMKYLW MPRLVERIQA TSTRSVSTSS CVTTSSDQFV  180
INNNTNMEHL GLMSNPNGHI TPDNSNVAVF PSSDLTECHV SCEVGKIGSD QDLVDPQMSS  240
QNYLDNNSGL FGDFTKMQDQ SYLNWFENIN GMIPNYSDSF WNIGNDEDLW LLQQQQQLLD  300
NGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-262512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15774s0093.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196350.0AY519635.1 Arabidopsis thaliana MYB transcription factor (At5g49620) mRNA, complete cds.
GenBankBT0260760.0BT026076.1 Arabidopsis thaliana At5g49620 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865745.10.0transcription factor MYB78
SwissprotQ9FGY30.0MYB78_ARATH; Transcription factor MYB78
TrEMBLD7MPC70.0D7MPC7_ARALL; AtMYB78
STRINGBostr.15774s0093.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-168myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]