PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0292.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20626.4 Da    PI: 9.5622
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.5e-161564150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          k+ie +  r vt+skRrngi  K +ELS+LC+a+va + +s +gk y++ 
  Bostr.15697s0292.1.p 15 KKIEKDADRLVTLSKRRNGIYTKLSELSILCGADVAFLGYSGSGKPYTFG 64
                          689*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-22777IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.754767IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-19766IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-15929IPR002100Transcription factor, MADS-box
PfamPF003191.6E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSSKKTKGKQ RINIKKIEKD ADRLVTLSKR RNGIYTKLSE LSILCGADVA FLGYSGSGKP  60
YTFGSPSFQA VAERFLNGDA SSSSSSQRSV VDAHHKAKIQ ELCKLYNSVM EKARAEEAKA  120
RMRVAASVEP LPVEEDAWWK VDPTEVKDQE ERKHLLEKFE GLYEKLCDEA AARNQRGDAE  180
KNNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0292.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867367.19e-96agamous-like MADS-box protein AGL29
RefseqXP_020867368.19e-96agamous-like MADS-box protein AGL29
TrEMBLD7KEP07e-91D7KEP0_ARALL; Uncharacterized protein
STRINGBostr.15697s0292.1.p1e-134(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-85AGAMOUS-like 64