PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15654s0054.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 192aa    MW: 22093.2 Da    PI: 10.6462
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15654s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.68e-191157349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           en++ r+vtfs+Rr gi+KKA  L  LC++evav+++s+t+  y+y
  Bostr.15654s0054.1.p 11 LENSISRKVTFSRRRDGIFKKADALAKLCNVEVAVLVISPTNLPYTY 57
                          69*****************************************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.067161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-24284IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-15323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-191257IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRRQIEIKY LENSISRKVT FSRRRDGIFK KADALAKLCN VEVAVLVISP TNLPYTYGNP  60
SFIDVVERIQ NPSASSILKN QAKLDRLMKE LERIKVHEEV LRKRQQKNLE IFNMKKIVGL  120
KLEDVIAFKE KLEAFQADLK KKHEEMAALS SPLMLSKNTK KKKIGIEFLP ERVSFLTGKY  180
MRFGPELLKT I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15654s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175207.15e-76AGAMOUS-like 102
TrEMBLQ9FZF21e-74Q9FZF2_ARATH; AGAMOUS-like 102
STRINGBostr.15654s0054.1.p1e-135(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.12e-79AGAMOUS-like 102