PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.1460s0111.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 457aa    MW: 49498.8 Da    PI: 8.847
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.1460s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017e-32203259259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  Bostr.1460s0111.1.p 203 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 259
                          8****************************************.***************8 PP
2WRKY105.13.6e-33342400159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Bostr.1460s0111.1.p 342 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 400
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28194261IPR003657WRKY domain
SuperFamilySSF1182902.22E-25200261IPR003657WRKY domain
SMARTSM007743.4E-35202260IPR003657WRKY domain
PfamPF031061.5E-24203258IPR003657WRKY domain
PROSITE profilePS5081124.03203261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-36327402IPR003657WRKY domain
SuperFamilySSF1182904.05E-29334402IPR003657WRKY domain
PROSITE profilePS5081137.734337402IPR003657WRKY domain
SMARTSM007743.8E-38342401IPR003657WRKY domain
PfamPF031061.5E-25343400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAVEDDVSSI RTTTLVAPTR PTITVPQRPP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD NQRTTSFSQL LAGAMSVSPG GGGGGRSTAG MFAGGGPMLT IPAGFSPSSL  120
LTSPMFFPPQ SPAQTSFVQP QPQTQPQRPD TISHHMPTST STAIHGRQSF EVSQADQRAR  180
NHHNNQANNN RSYNVVNVDK PADDGYNWRK YGQKPIKGCE YPRSYYKCTH VNCPVKKKVE  240
RSSDGQITQI IYKGQHDHER PQNRRGGGGR DSVEVGDIHF VGGAGQMMES SDDSGYGKDH  300
DDDDDEDLPG SKIRKIDGVS TTHRTVTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP  360
HPRSYYKCTT ANCTVRKHVE RASTDAKAVI TTYEGKHNHD VPAARNGTAA APAAAAGTSD  420
HHRMRSMSGN NMSFGNNNNS GQSPVLLRLK EEKITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38203403878Probable WRKY transcription factor 4
2lex_A2e-38203403878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.1460s0111.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297601.10.0probable WRKY transcription factor 58 isoform X2
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLR0HLE10.0R0HLE1_9BRAS; Uncharacterized protein
STRINGBostr.1460s0111.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-166WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]