PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13671s0116.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 347aa MW: 39464.8 Da PI: 6.1054 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101 | 7.9e-32 | 183 | 238 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Bostr.13671s0116.1.p 183 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 238 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.281 | 180 | 240 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 182 | 241 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.81E-17 | 182 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-28 | 183 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-6 | 185 | 236 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:1901699 | Biological Process | cellular response to nitrogen compound | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MIKKLSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLELVTQAIE ACKREIPEMT 60 TENVYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE EFDDEHGNHD PDNDSEDKNT 120 KSDWLKSVQL WNQPDPLLPK EERLQQEMME TVKRDESMRK DPMMNGGEGR KREAEKDGGG 180 GRKQRRCWSS QLHRRFLNAL QHLGGPHVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR 240 RPRQTVPNNE NSQTQHFVVV GGLWVPRSDY STGKTTEGAT TSSTTTTTGI YGAMAAPPPP 300 QWPSHSNFRP SIIVEEGSGS HSEEVVVRCS SPAMSSSTRN HYVKNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00140 | DAP | Transfer from AT1G13300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13671s0116.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367336 | 0.0 | AF367336.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds. | |||
GenBank | AY124865 | 0.0 | AY124865.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495195.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like isoform X1 | ||||
Swissprot | Q9FX67 | 0.0 | HRS1_ARATH; Transcription factor HRS1 | ||||
TrEMBL | D7KQE4 | 0.0 | D7KQE4_ARALL; Myb family transcription factor | ||||
STRING | Bostr.13671s0116.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13508 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13300.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13671s0116.1.p |
Publications ? help Back to Top | |||
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