PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0337.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 193aa    MW: 22153.6 Da    PI: 4.9332
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0337.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.34.8e-33401322103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F++k+yei++d+++++++sws+ g sfvv+d+++f+ ++ p yFkh+nf+SF+RQLn+Y+F+k+++e+         w F ++ F  g+
  Bostr.13158s0337.1.p  40 FITKTYEIVDDPNTNHIVSWSRGGISFVVWDPHSFSATIFPLYFKHNNFSSFIRQLNTYEFRKIETER---------WDFMNEGFLMGQ 119
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           ++ll++ikr++s+
  Bostr.13158s0337.1.p 120 RDLLKSIKRQTSS 132
                           *********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-4736129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3137129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3437129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-2940129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-184063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MHPSFCDVSR KFEIHYVIKI KEDPNLGPLP PLYEPGLSPF ITKTYEIVDD PNTNHIVSWS  60
RGGISFVVWD PHSFSATIFP LYFKHNNFSS FIRQLNTYEF RKIETERWDF MNEGFLMGQR  120
DLLKSIKRQT SSSSSSPSLH HSHPEGHDPS VELPGGGSEM QGYGRQQIDG VERELDDGFW  180
EELLMNNDNS EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-224013420125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0337.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4467841e-109DQ446784.1 Arabidopsis thaliana clone pENTR221-At3g63350 heat shock transcription factor family protein (At3g63350) mRNA, complete cds.
GenBankDQ6531661e-109DQ653166.1 Arabidopsis thaliana clone 0000012913_0000009313 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512753.12e-70PREDICTED: heat stress transcription factor A-7b-like isoform X2
SwissprotQ9M1V53e-65HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLR0HQ531e-67R0HQ53_9BRAS; Uncharacterized protein
STRINGBostr.13158s0337.1.p1e-141(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.16e-61HSF family protein