PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0030.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HD-ZIP
Protein Properties Length: 315aa    MW: 34624 Da    PI: 8.8148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18160214256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  Bostr.13158s0030.1.p 160 RKKLRLSKEQALVLEETFKEHSTLNPKQKVALAKQLNLRTRQVEVWFQNRRARTK 214
                           788899***********************************************98 PP
2HD-ZIP_I/II1231.5e-39160249191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq+ +LEe+F+e+++L+p++Kv+la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr 
  Bostr.13158s0030.1.p 160 RKKLRLSKEQALVLEETFKEHSTLNPKQKVALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVSELR- 247
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  Bostr.13158s0030.1.p 248 AL 249
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.0E-361117IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466898.13E-19141217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-19144210IPR009057Homeodomain-like
PROSITE profilePS5007117.248156216IPR001356Homeobox domain
SMARTSM003891.7E-15158220IPR001356Homeobox domain
PfamPF000465.1E-16160214IPR001356Homeobox domain
CDDcd000862.02E-15160217No hitNo description
PROSITE patternPS000270191214IPR017970Homeobox, conserved site
SMARTSM003401.6E-26216259IPR003106Leucine zipper, homeobox-associated
PfamPF021835.7E-11216250IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGERDDGLGI SLSLSLGFNQ KQPSSRLNPM PLASYSSSSH MHMQQSNYSH PQKIQNSWIN  60
MFQSSERNSD MRSFIRGIDV NRAPSTVVVD VEDDAAGVSS PNSTVSSVMS GKRSERELMA  120
AAAAGRGGRV EDNEMERASC SLGGGSDDED GSGNGDDGSR KKLRLSKEQA LVLEETFKEH  180
STLNPKQKVA LAKQLNLRTR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE NLTEENRRLQ  240
KEVSELRALK LSPHLYMHMK PPTTLTMCPS CERVAVTSSS SSVAPPVMTS SSPMGPMSPW  300
AAMPLRQRPA AGSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164SRKKLRL
2208216RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4407810.0AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene).
GenBankAY0995650.0AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
GenBankBT0087130.0BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882296.10.0homeobox-leucine zipper protein HAT3
SwissprotP466020.0HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLD7LRP70.0D7LRP7_ARALL; Uncharacterized protein
STRINGBostr.13158s0030.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-127homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]