PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0496.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 371aa    MW: 41064.6 Da    PI: 4.1276
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0496.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.4e-121349339
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                          i nk  r v fskR  g+  KA+EL+ L da++a+i 
  Bostr.13129s0496.1.p 13 IGNKDSRAVAFSKRCRGLYSKASELCLLSDAQIAIIA 49
                          889********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-10366IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.409348IPR002100Transcription factor, MADS-box
CDDcd002667.52E-22581No hitNo description
SuperFamilySSF554555.36E-15578IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-5525IPR002100Transcription factor, MADS-box
PfamPF003191.2E-111358IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-52540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGGVKRKISI ELIGNKDSRA VAFSKRCRGL YSKASELCLL SDAQIAIIAT PVSPNSNVSF  60
YTFGHSSVDN VVAAFLANQR PREGLGLGFG FWWEDERLAK SDDPEELRDA MDSMSKMLQN  120
LKELRFNALQ NRRDCEDVKK KKKGFLHGTH QKQTLNPQSC SASLCIQDDV TVNLDGFSKN  180
IEEQALAVSE NSNNNGLLGN LDGCNQELDL DQIFDFVFET KSESLSMNSE MNDVSMVTPN  240
QNPFSDSEAV VDGELVMEMG NIHLSVLDED LMLTISDNDN NNNNVLPENL GEFNQELDLD  300
QLIGFETNYE SLLKSLEMDG VSMVTRKNQN LGSDSEAVED GGLVVINRDL DEDSLHFSDY  360
FNELTSIAAI *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0496.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879779.11e-173agamous-like MADS-box protein AGL97
SwissprotQ9C6335e-83AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A178UP041e-144A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ611e-144Q9LZ61_ARATH; AGAMOUS-like 99
STRINGBostr.13129s0496.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-146AGAMOUS-like 99
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]