PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.13129s0456.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 28620 Da PI: 6.9774 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.1 | 1.3e-30 | 82 | 135 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Bostr.13129s0456.1.p 82 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 135 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-20 | 79 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 79 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-31 | 81 | 140 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-24 | 83 | 135 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.9E-8 | 85 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MREEDSNWFS KWEEELPSPE ELIPISQSLI TPDLAIAFDL HRHNRENSGQ PLPQTTQPQQ 60 PNSSAEFAGD STGDEPARTL KRPRLVWTPQ LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG 120 LTRENVASHL QKYRLYLKRM QSGGGGGNVG ESDHLFTSSD HFIPSFVPIS TQHQQIAAAT 180 THLQPPSQFL HRQISAANFT SPTKATDQAM FLARQSQQQP VFRPASLHLH SQVANYTQDL 240 ESGAKTVLTL FPTRDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-32 | 82 | 138 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00056 | PBM | Transfer from AT5G05090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.13129s0456.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005245 | 1e-158 | AB005245.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13. | |||
GenBank | AY084791 | 1e-158 | AY084791.1 Arabidopsis thaliana clone 118003 mRNA, complete sequence. | |||
GenBank | AY093188 | 1e-158 | AY093188.1 Arabidopsis thaliana unknown protein (At5g05090) mRNA, complete cds. | |||
GenBank | BT006289 | 1e-158 | BT006289.1 Arabidopsis thaliana At5g05090 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-158 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491039.1 | 1e-146 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 8e-51 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | R0HFE3 | 1e-141 | R0HFE3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.13129s0456.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 1e-130 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.13129s0456.1.p |
Publications ? help Back to Top | |||
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