PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.13129s0160.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

TCP

Protein Properties

Length: 265aa MW: 30078.4 Da PI: 7.7859

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.13129s0160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.3	9.8e-29	47	115	3	71
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 g+kdrhsk++T +g+RdRR+Rlsa +a++++dLq++LG+ ++sk i+WL ++ak+ ++ l+ +++++ Bostr.13129s0160.1.p 47 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQVYDLQERLGLSQPSKVIDWLVEAAKKDVDLLPPLQFPPGF 115 78*************************************************************887763 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-26	48	148	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.946	48	106	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEMRLNSSRE DIRFKQEVDD HNQASSLSSL KQRWNNPRIV RVSRTFGGKD RHSKVCTVRG 60 LRDRRIRLSA MTAIQVYDLQ ERLGLSQPSK VIDWLVEAAK KDVDLLPPLQ FPPGFHQVNP 120 NLNGVGESFP GVFESFDLGS CSNRENLDLE KRKWVKFDQN SNLDHGFDMD HHHFSNSIQS 180 NKFYFPTTSS SGSYHYNLGH LQQYSLLDQS GNVTVAFSNN SNLNLPVVET VSSLFPRYPS 240 FLGGGQLQLF SENSNSSRQT DHVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-16	53	107	1	55	Putative transcription factor PCF6
5zkt_B	1e-16	53	107	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00497	DAP	Transfer from AT5G08070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.13129s0160.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL357612	1e-108	AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project).
GenBank	BT029995	1e-108	BT029995.1 Arabidopsis thaliana At5g08070 mRNA, complete cds.
GenBank	CP002688	1e-108	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423139.1	1e-159	PREDICTED: transcription factor TCP17-like
Swissprot	Q9LEZ9	1e-124	TCP17_ARATH; Transcription factor TCP17
TrEMBL	R0H8V5	1e-149	R0H8V5_9BRAS; Uncharacterized protein
STRING	Bostr.13129s0160.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08070.1	1e-126	TCP domain protein 17

Link Out ? help Back to Top
Phytozome	Bostr.13129s0160.1.p

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]