PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.12659s0426.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bHLH | ||||||||
Protein Properties | Length: 132aa MW: 15226.2 Da PI: 9.6313 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.8e-09 | 71 | 116 | 6 | 55 |
HHHHHHH.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrR.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n E++R R+ i+s++e L+e+ P++ + + ++iL A+eY+++Lq Bostr.12659s0426.1.p 71 NLLEKKRkRESIRSKLEALKEITPNC-----PQSDIIAILDSAIEYMRHLQ 116 788988889****************8.....57899**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.064 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-9 | 71 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-7 | 71 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-6 | 71 | 116 | No hit | No description |
Pfam | PF00010 | 1.8E-6 | 71 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MNNDEEFLRL WLEKLNSLAN PEAHSNVRRI NSEGGEDNVR GKRPAESRRE GEKNRVKRQC 60 VSKSSDNSHD NLLEKKRKRE SIRSKLEALK EITPNCPQSD IIAILDSAIE YMRHLQLAAL 120 FIVLQEYVRN K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.12659s0426.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460396.1 | 6e-66 | PREDICTED: transcription factor MEE8-like isoform X1 | ||||
Swissprot | Q9FRI0 | 4e-40 | MEE8_ARATH; Transcription factor MEE8 | ||||
TrEMBL | R0ILF6 | 4e-52 | R0ILF6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.12659s0426.1.p | 2e-90 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17061 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25310.1 | 2e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.12659s0426.1.p |