PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.12659s0408.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 31412 Da PI: 4.2586 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.8 | 6.2e-09 | 80 | 125 | 4 | 53 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 GVr ++ +g+++AeI+ + + ++ +lg++ t +eA ka++ + ++ Bostr.12659s0408.1.p 80 VGVRPRP-SGKFAAEIMNpF-----TkTKKWLGTYETLQEAEKAYVDKKAEY 125 69**999.7*********66.....3499****************9988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.2E-81 | 1 | 274 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 2.83E-12 | 76 | 118 | No hit | No description |
SMART | SM00380 | 2.1E-4 | 77 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.246 | 78 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-10 | 80 | 125 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-12 | 81 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MKSFVKPKRL LRKVTVIVSD PDATDDSSSD ECLELPKPRK VKRIVHEITF LSEDSEISQD 60 RCNGVKTSRK KSPRQAKYPV GVRPRPSGKF AAEIMNPFTK TKKWLGTYET LQEAEKAYVD 120 KKAEYDTFAS SGSSVSSSVV SVTSQCLRSP ASASVSCVSA DDLSKEKTSL NEDVAASGDS 180 TKEVFANFDF SDLQIPDLSF LAAEDDSMVS DANGAELDFD CFLTADSDHL LDDYSLLDND 240 INISGFENSV PSELPDCDFT DMELVLGDLK FAYADQLTPP LDIAFE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.12659s0408.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC079281 | 0.0 | AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence. | |||
GenBank | AK119144 | 0.0 | AK119144.1 Arabidopsis thaliana At1g25470 mRNA for unknown protein, complete cds, clone: RAFL21-49-G19. | |||
GenBank | BT005281 | 0.0 | BT005281.1 Arabidopsis thaliana At1g25470 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010460372.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor ERF116-like | ||||
Refseq | XP_010460373.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor ERF116-like | ||||
Swissprot | Q8GW17 | 1e-136 | EF116_ARATH; Ethylene-responsive transcription factor ERF116 | ||||
TrEMBL | R0II30 | 1e-151 | R0II30_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.12659s0408.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15119 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25470.2 | 1e-111 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.12659s0408.1.p |