PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0331.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 504aa    MW: 56567.6 Da    PI: 8.5087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0331.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.12.8e-22238329699
                           ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                    B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           +++++l+++ l+l + f++++g++k ++ +++l++e+gr W++ l++  + + ++l++GW +F+++ngLk+gD++ Fkl+g +++++v+
  Bostr.12659s0331.1.p 238 VTASSLNTDKLYLWRGFVSSNGLDKGCN-KIVLKNEWGRGWTLVLKHYESHRFTILRRGWTSFCQDNGLKAGDSFKFKLVG-TGEKPVL 324
                           5788899999**************9886.****************99999999**************************99.7788999 PP

                           EEE-S CS
                    B3  95 kvfrk 99 
                           +++++
  Bostr.12659s0331.1.p 325 SLCSA 329
                           99986 PP
2B351.12.4e-16406499499
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            +++++++ +  l lp+ f++ +g++k++  ++tl  ++g +  v l  +k+sg + ++kGW+eF+ a+g+k  +++v++l++++e++l
  Bostr.12659s0331.1.p 406 LTLTPSAFLTYKLFLPRGFTQMNGINKPG--KITLLGQDGVKRVVDLLQEKRSGIMRFGKGWREFCAAQGVKIDESFVLELIWEEEASL 492
                           455555566666************99766..7***************99999999********************************** PP

                           EEEEE-S CS
                    B3  93 vvkvfrk 99 
                           v+k++ k
  Bostr.12659s0331.1.p 493 VLKFCTK 499
                           **99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.84E-6145214IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.057152220IPR003340B3 DNA binding domain
PROSITE profilePS508637.627185220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-21225328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-21229329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.353233329IPR003340B3 DNA binding domain
SMARTSM010198.0E-28234330IPR003340B3 DNA binding domain
CDDcd100171.25E-20238328No hitNo description
PfamPF023621.4E-21238329IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16395497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-17399497IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-12402488No hitNo description
PROSITE profilePS5086311.251403500IPR003340B3 DNA binding domain
SMARTSM010193.5E-20403500IPR003340B3 DNA binding domain
PfamPF023621.6E-15403499IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MHPAQNTSAV IGGSGSNGTM RYQTNDGTSS VTTADDSKEN LNQRLLFYCV EKNVTNVTLL  60
FTTLLFQSNR DKTPLECSEG SDDIKPEYSE EECNEDKNIS QHCLEIKKRR YWSRCRAFVE  120
NMDDDQTNIG NSSRVKRNPR KKVESSPDHS SFVANVTASS LRYDQLYLPL SFGMSDGLRQ  180
NERPGWTRFC AANGMSQGQR YTFKLFQKSA PPVMRLYLAD HRPKSESSSH HSYLVGSVTA  240
SSLNTDKLYL WRGFVSSNGL DKGCNKIVLK NEWGRGWTLV LKHYESHRFT ILRRGWTSFC  300
QDNGLKAGDS FKFKLVGTGE KPVLSLCSAD SNHEKTPLEC PEGSDDVKSL SSNPSSGDDS  360
SRSEESEEKS IEDKIISQDC LAIKKRKYYA SCQASSSYSQ NRFVTLTLTP SAFLTYKLFL  420
PRGFTQMNGI NKPGKITLLG QDGVKRVVDL LQEKRSGIMR FGKGWREFCA AQGVKIDESF  480
VLELIWEEEA SLVLKFCTKV NSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0331.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323080.10.0transcriptional factor B3 family protein
SwissprotQ84WP31e-160REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A1P8AVZ80.0A0A1P8AVZ8_ARATH; Transcriptional factor B3 family protein
STRINGBostr.12659s0331.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-141B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]