PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.11568s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 236aa MW: 27393.4 Da PI: 4.9955 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114 | 9.8e-36 | 32 | 124 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl k+y+++ed++++e+isw+e+g+ fvv+++ ef++++Lp+ Fkh nf+SFvRQLn+YgF+kv++++ weF+++ F+kg+ Bostr.11568s0011.1.p 32 FLVKTYKVVEDPTTDEVISWNEDGTGFVVWQPAEFSRDLLPTLFKHCNFSSFVRQLNTYGFRKVTTTR---------WEFSNEMFQKGQ 111 9****************************************************************999.........************ PP XXXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkkse 103 +el+++i+r+ks+ Bostr.11568s0011.1.p 112 RELMSNIRRRKSN 124 **********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.1E-56 | 28 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.4E-37 | 29 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.98E-33 | 29 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-31 | 32 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-18 | 32 | 55 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-18 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 71 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-18 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MNDEELLPLE FMIGKSTSTA EIQPPPPLPP PFLVKTYKVV EDPTTDEVIS WNEDGTGFVV 60 WQPAEFSRDL LPTLFKHCNF SSFVRQLNTY GFRKVTTTRW EFSNEMFQKG QRELMSNIRR 120 RKSNHWSHNK SHHQVVPTTT VKQEDHQRLG IDHHHEDQRS SSTSSSFEYT ALLDENKCLK 180 NENELLSSEL GKTRKKCKQL MELVERYRGE DEDETDDEDG NEEDDGLKLF GVKLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-21 | 30 | 121 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-21 | 30 | 121 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-21 | 30 | 121 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-21 | 30 | 121 | 27 | 129 | Heat shock factor protein 1 |
5hdg_A | 2e-21 | 30 | 121 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-21 | 30 | 121 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-21 | 30 | 121 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-21 | 30 | 121 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-21 | 30 | 121 | 8 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.11568s0011.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029452 | 0.0 | BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181700.1 | 1e-138 | heat shock transcription factor B3 | ||||
Swissprot | O22230 | 1e-139 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A178VUP7 | 1e-137 | A0A178VUP7_ARATH; HSFB3 | ||||
STRING | Bostr.11568s0011.1.p | 1e-175 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10814 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 1e-110 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.11568s0011.1.p |