PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0474.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 454aa    MW: 49127.2 Da    PI: 6.5325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0474.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.5e-09279327355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Bostr.10273s0474.1.p 279 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 327
                           58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-17274345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-11274331No hitNo description
PROSITE profilePS5088815.478276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-17277344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-6279327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDISEEKRNR DSTVNYDSMM DSFGQTLWYD PTNVVGYGGF NNVQNNGGSA SSSSFRGNID  60
RSLEMGWNLP NLLPPKGNGL FLPNANSFLP PSMAQFPADS GFIERAARFS LFSDMVNQPL  120
GNPESIGLFL QGGGTMQGQC QSNELNVGEP HNDASTVVKD PNVRSSEQSK PNVPGSGNVS  180
EDTQSSGGNG QKGGETSSKG IDTRKRKRNG QNSEAAQSHR SQQSEEEPDN NGDKKRNDEQ  240
SPNSPGNKTN SGKQQGKQSS DPPKDGYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ  300
DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQMDFNLEG LLAKDALQLR  360
AGSSSTTPFP PNMSMAYPPL PHGFMQQTLS SIGRTISSPL SPMNGGFKRQ ETNGWEADLQ  420
NVIHINYGAS DVTPDPQAAA TASLPAANMK VEP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0474.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302168.10.0transcription factor bHLH49
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLR0GH970.0R0GH97_9BRAS; Uncharacterized protein
STRINGBostr.10273s0474.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]