PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0411.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 350aa    MW: 39842.2 Da    PI: 8.2107
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0411.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.3e-211253445
                          -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          +n+  rq t++kR++gi+KKA+ELS+LCd++v +++fs+tgk
  Bostr.10273s0411.1.p 12 QNNNGRQATYAKRKHGIMKKAKELSILCDIDVVLLMFSPTGK 53
                          68888***********************************98 PP
2K-box16.92.7e-071231772176
                 K-box  21 lakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleq 76 
                           ++ L+ +++ +    R   + +Le+++ +++LqqLe+ L  sl +i ++K  +    
  Bostr.10273s0411.1.p 123 ARSLQTQLSDI--HTRLSYWTELENINsVEDLQQLEHSLRLSLAQIHARKASMPQHR 177
                           33344444443..346778999999963799*******************8765443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.98E-23180IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.694153IPR002100Transcription factor, MADS-box
CDDcd002662.68E-22282No hitNo description
PRINTSPR004041.5E-15323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-181254IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-153859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.693109208IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRVKLKIMK LQNNNGRQAT YAKRKHGIMK KAKELSILCD IDVVLLMFSP TGKASLCIGK  60
HSIGEVIAKF AQLTPQERAK RSFCVDATLN ALRKTFMKLD HDVDISEFLD RSTPPVGGLS  120
KKARSLQTQL SDIHTRLSYW TELENINSVE DLQQLEHSLR LSLAQIHARK ASMPQHRQRQ  180
LMSSECKNQL QTAIDIDFGT EMEQQLENFS WVRTDENMND PLKEEDRSLQ LHQMFKDITC  240
SANSSLGNNS GLFYSIPGTS ADPNPQFSNL SFLNDPKLQQ LAEWNLLGSP ADYYVSQILE  300
ASYKPQFGGN NWHYKNTGDL RRNYSVVWAS SETLPYVAVF DDPLYFRVNT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0411.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1150130.0AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889921.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA42e-75AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A178WKN70.0A0A178WKN7_ARATH; AGL94
STRINGBostr.10273s0411.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.10.0AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]