PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.10273s0116.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25629.4 Da PI: 9.7526 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.8e-21 | 50 | 98 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+ + +rqvtfskRr g++KKA ELSvLC+a++ +i fs +++y + Bostr.10273s0116.1.p 50 KEIKVENRRQVTFSKRRLGLFKKAAELSVLCGAQIGIITFSRCNRIYAF 98 5688899**************************************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-25 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.684 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-22 | 42 | 113 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-19 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-21 | 52 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-19 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-19 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MEDGEASTIT CLPPTKQKPL QNPNLLVNQK KGSKLQKPKT TKGRQKIEIK EIKVENRRQV 60 TFSKRRLGLF KKAAELSVLC GAQIGIITFS RCNRIYAFGN VDTLIDKYIR KTPVMLRSNP 120 GGDVATGEEN NDGLMWWERA VESVPEEEME EYKKALSVLR ENLLTRIYQM GNDRTAENLP 180 AFPNEMAMAD WKLTNENLMA RNDRGYVGND GGLDFAVPFM SQKGRQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 4e-14 | 43 | 111 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 4e-14 | 43 | 111 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 4e-14 | 43 | 111 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 4e-14 | 43 | 111 | 1 | 67 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-14 | 43 | 111 | 1 | 67 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-14 | 43 | 111 | 2 | 68 | MEF2C |
5f28_B | 4e-14 | 43 | 111 | 2 | 68 | MEF2C |
5f28_C | 4e-14 | 43 | 111 | 2 | 68 | MEF2C |
5f28_D | 4e-14 | 43 | 111 | 2 | 68 | MEF2C |
6byy_C | 5e-14 | 43 | 139 | 2 | 90 | MEF2 CHIMERA |
6byy_D | 5e-14 | 43 | 139 | 2 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.10273s0116.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC016529 | 0.0 | AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence. | |||
GenBank | AY141235 | 0.0 | AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds. | |||
GenBank | BT025647 | 0.0 | BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446421 | 0.0 | DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds. | |||
GenBank | DQ652929 | 0.0 | DQ652929.1 Arabidopsis thaliana clone 0000018934_0000013069 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301410.1 | 1e-144 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | R0ICD3 | 1e-142 | R0ICD3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.10273s0116.1.p | 1e-167 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72350.1 | 1e-119 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.10273s0116.1.p |