PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10089s0026.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 546aa    MW: 59668.2 Da    PI: 5.8703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10089s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-30304362259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Bostr.10089s0026.1.p 304 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgACPVRKQVQRCAEDRSILITTYEGNHNHP 362
                           7****************************99***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-33288364IPR003657WRKY domain
SuperFamilySSF1182902.48E-27296364IPR003657WRKY domain
PROSITE profilePS5081128.908298364IPR003657WRKY domain
SMARTSM007741.6E-35303363IPR003657WRKY domain
PfamPF031062.6E-26305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MFRFPVSLGG SRDEARHDQI TPLDEHRVVV DEVDFFSEKR DRGSRENLND EDDEANKVHV  60
KKENLRVEEN DRSRDVNIGL NLLTANTGSD ESTVDDGLSM DMEDKRAKIE NALQEELKTM  120
KIENQRLRDM LSQATNNFNS LQMQLVAIMR QQEQRNSSQD HLLATEGKVE GRKRQELQTM  180
VPRQFMDLGP SSGAADHDAE VSSEERTMIH SGSPPSLLES SNLRENGKRL LGREESPEES  240
ESNAWGNPNK VPRHNSSSRN NNNNSPEATM RNGNGNFIDQ SAAEATMRKA RVSVRARSEA  300
PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MAGACPVRKQ VQRCAEDRSI LITTYEGNHN  360
HPLPPAAMAM ASTTTAAASM LLSGSMSSQD GLMNTTNLLA RAILPCSSTM ATISASAPFP  420
TITLDLTNSP NGNNPNMTTN NPLMQLAQRP GFNPAVLPEA VGQALYYNQQ QSKFSGLQLP  480
AQPLQIPATS SMAESVCAAS AAIASDPNFT AALAAAITSI MNGSSHQNNN TNNNNVATSN  540
GDNRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23290366176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10089s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633874.10.0probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLR0GHU50.0R0GHU5_9BRAS; Uncharacterized protein
STRINGBostr.10089s0026.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31