PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.10064s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 158aa MW: 18465.2 Da PI: 9.2473 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 111.3 | 1.1e-34 | 4 | 131 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 F+Pt+eelv++yLk+k g++ ++e+i+e++ ++++P+ Lp +k+++++ +wyfFs+ + ++a+++ +r+t sg+W tgkd+ + Bostr.10064s0010.1.p 4 FSPTEEELVNHYLKNKNLGNTWLVDEAISEINFLSYNPEFLPclAKIQSDDLKWYFFSRLEYTNAKKHAIKRSTGSGFWMPTGKDRIIR 92 9********************999999***************6558888888************************************* PP NAM 94 skkgelvglkktLvfykgrapkge....ktdWvmheyrl 128 k+g ++glkktLv+++ +a +g +tdWvmheyr+ Bostr.10064s0010.1.p 93 GKDGVEIGLKKTLVYHERKAFNGFlngiRTDWVMHEYRI 131 ****************888765433333*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.827 | 1 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-21 | 3 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.41E-39 | 4 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MVIFSPTEEE LVNHYLKNKN LGNTWLVDEA ISEINFLSYN PEFLPCLAKI QSDDLKWYFF 60 SRLEYTNAKK HAIKRSTGSG FWMPTGKDRI IRGKDGVEIG LKKTLVYHER KAFNGFLNGI 120 RTDWVMHEYR ITCLPPYQRT YVIRQVMYKD KDGVTTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-18 | 4 | 131 | 21 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.10064s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428489.1 | 7e-66 | PREDICTED: NAC domain-containing protein 69-like | ||||
Swissprot | A8MQY1 | 2e-58 | NAC68_ARATH; NAC domain-containing protein 68 | ||||
TrEMBL | A0A1J3F362 | 2e-59 | A0A1J3F362_NOCCA; NAC domain-containing protein 69 (Fragment) | ||||
STRING | Bostr.10064s0010.1.p | 1e-115 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01520.1 | 1e-62 | NAC domain containing protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.10064s0010.1.p |
Publications ? help Back to Top | |||
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