PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G01520.1 | ||||||||
Common Name | anac067, F11O4.3, NAC067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 302aa MW: 34507.1 Da PI: 5.5695 | ||||||||
Description | NAC domain containing protein 67 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.4 | 5.4e-40 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykveP.wdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 p G+rF+Pt ee++++yLk+k+ gk+ ++e+i+e++i++++P +dLpk ++++e+ ewyfFs+ + +++++ + +r+t sg+Wk +g d+++ +k AT4G01520.1 5 PTGYRFSPTGEEVINHYLKNKILGKTWLVDEAISEINILNHKPsKDLPKlaRIQSEDLEWYFFSPIEYTNPNKMKMKRTTGSGFWKPSGVDRKIRDKr 102 78************************999999***********558995458888888**************************************97 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++g+kktLv+++g++p+g++t Wvmhey++ AT4G01520.1 103 gNGVVIGIKKTLVYHEGKSPHGVRTPWVMHEYHI 136 77888***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-44 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.919 | 4 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-23 | 5 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MMKDPTGYRF SPTGEEVINH YLKNKILGKT WLVDEAISEI NILNHKPSKD LPKLARIQSE 60 DLEWYFFSPI EYTNPNKMKM KRTTGSGFWK PSGVDRKIRD KRGNGVVIGI KKTLVYHEGK 120 SPHGVRTPWV MHEYHITCLP HHKRKYVVCQ VKYKGEAAEI SYEPSPSLVS DSHTVIAING 180 EPEPELQVEQ PGKENLLGMS VDDLIEPMNQ QEEPQGPHLA PNDDEFIRGL RHVDREPVEY 240 LFANEENMDG LSIMNDLTIP MIAQQEDLIL SEWEGFIAAT FFSDNNNNNN LNVHQLTSFL 300 PG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-27 | 5 | 136 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 18411658 | 0.0 | ||||
Expression Atlas | AT4G01520 | - | ||||
AtGenExpress | AT4G01520 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G01520.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G01520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493671 | 0.0 | AB493671.1 Arabidopsis thaliana At4g01540 mRNA for hypothetical protein, partial cds, clone: RAAt4g01540. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_192061.1 | 0.0 | NAC domain containing protein 67 | ||||
Swissprot | A8MQY1 | 0.0 | NAC68_ARATH; NAC domain-containing protein 68 | ||||
TrEMBL | O82593 | 0.0 | O82593_ARATH; F11O4.3 | ||||
STRING | AT4G01520.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G01520.1 |
Entrez Gene | 828204 |
iHOP | AT4G01520 |
wikigenes | AT4G01520 |
Publications ? help Back to Top | |||
---|---|---|---|
|