PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10040s0187.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 277aa    MW: 32557.7 Da    PI: 8.4466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10040s0187.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.61.1e-141612810128
                   NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                            ++e+++++Lk+ + +++   + +i+ vd+++++P+     + + e  +y  +k ++ +a gk      +sg W+  g++k ++sk +g
  Bostr.10040s0187.1.p  16 AEDEIISRFLKRMIVNRDSWPDLFIEGVDVFNTNPNVE---F-TPEIPVYVIVKPRT-EACGKTDG--CESGCWRIMGREKLIKSKeTG 97 
                           689**********99999666457***********743...2.12335566665544.44554333..579*************99788 PP

                   NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                           ++ g kk+L f ++r+p+  k +Wvm+eyrl
  Bostr.10040s0187.1.p  98 KVLGFKKILKFCEKRKPREYKRSWVMEEYRL 128
                           899**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.5927146IPR003441NAC domain
PfamPF023659.7E-1013128IPR003441NAC domain
SuperFamilySSF1019412.62E-2716144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEDELDADYV YDMHNAEDEI ISRFLKRMIV NRDSWPDLFI EGVDVFNTNP NVEFTPEIPV  60
YVIVKPRTEA CGKTDGCESG CWRIMGREKL IKSKETGKVL GFKKILKFCE KRKPREYKRS  120
WVMEEYRLTN NLNCKQDHVI CKIRLLFQTE IGFLLAKHFN TTSESLLANE LLPSYGFHSL  180
DPQTEDRSYL TMIRMASGEG NDWPSYVTNT VYRLNPLMLV DPLDQTFRQY GTCIFANETF  240
EHFYRLNIKR FLVKYVKKPL REPMRKLAKI TFGLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10040s0187.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176238.11e-115NAC domain containing protein 24
TrEMBLO807561e-113O80756_ARATH; NAC domain containing protein 24
STRINGBostr.10040s0187.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60350.11e-118NAC domain containing protein 24