PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0697s0050.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 299aa    MW: 33537 Da    PI: 10.0858
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0697s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.8e-1637120186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  v  L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Bostr.0697s0050.1.p  37 EWSEGAVSSLLEAYESKWVLRNRAKLKGQDWEDVARHVssraTNTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 120
                          5*************************************77666666778999*****************99997......46****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2035122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MENGESNQEN PKSLNHDESH KKPSASSVVV DRLKRDEWSE GAVSSLLEAY ESKWVLRNRA  60
KLKGQDWEDV ARHVSSRATN TKSPKTQTQC KNKIESMKKR YRSESATADG SSWPLYPRLD  120
HLLRGTQPQP QPQPQAVLPL NCSVPLLLLE PPSPAMAHPP QISYGSNGVG KIPKEDGFKP  180
ENKPEKATEM DTDSSTPVVK TTVRGKKVKR RYKEEKEEIA GSIRWLAEVV MRSERTRLET  240
MKEIERMRAE AEAKRGEMDL KRTEIMANTQ LEIARLFAVA ASSGHNKGVD SSLRIGRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0697s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0843910.0AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBankAY1400410.0AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBankBT0063220.0BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881773.10.0trihelix transcription factor ASIL1
TrEMBLD7LUT40.0D7LUT4_ARALL; Transcription factor
STRINGBostr.0697s0050.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-167sequence-specific DNA binding transcription factors