PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0574.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 237aa    MW: 26483.1 Da    PI: 6.7496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0574.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-121766148
                         TSSS-HHHHHHHHHHHH.HTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavk.qlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +lvd  + + Ggg +W+ +++  g++R++k+c++rw +yl
  Bostr.0568s0574.1.p 17 KGPWTVEEDGKLVDFLRtRVGGGwCWRDVPKLAGLRRCGKSCRLRWTNYL 66
                         79************886167777*************************97 PP
2Myb_DNA-binding53.94.2e-1772116147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +++eE +l +d++++lG++ W++Ia +++ gRt++++k++w+++
  Bostr.0568s0574.1.p  72 RGLFSEEEIQLVIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 116
                          7889******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17869IPR009057Homeodomain-like
PROSITE profilePS5129410.9351266IPR017930Myb domain
SuperFamilySSF466892.06E-2314113IPR009057Homeodomain-like
SMARTSM007170.00141668IPR001005SANT/Myb domain
PfamPF002492.2E-101766IPR001005SANT/Myb domain
CDDcd001671.27E-41966No hitNo description
PROSITE profilePS5129425.74467121IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2570122IPR009057Homeodomain-like
SMARTSM007172.0E-1671119IPR001005SANT/Myb domain
PfamPF002492.1E-1572116IPR001005SANT/Myb domain
CDDcd001674.79E-1275117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MIMVGRKPCC DEVGLRKGPW TVEEDGKLVD FLRTRVGGGW CWRDVPKLAG LRRCGKSCRL  60
RWTNYLRPDL KRGLFSEEEI QLVIDLHARL GNRWSKIAVE LPGRTDNDIK NYWNTHIKRK  120
LIRMGIDPNT HRRFDQQKVN EEKILVNGPK PPSASEVPVV LQNDTSAGNL NQLANVDGDA  180
QPWSFLMEND GGGGGAGELT MLLSGDITSS CSSSSSLWFK YGDLGYEDLE LGCFDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261512125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0574.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990260.0AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAY5196440.0AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483899.11e-147PREDICTED: protein ODORANT1-like
SwissprotQ50EX61e-66ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D3BFT81e-135A0A0D3BFT8_BRAOL; Uncharacterized protein
TrEMBLA0A3N6S0191e-135A0A3N6S019_BRACR; Uncharacterized protein
TrEMBLR0F0I21e-135R0F0I2_9BRAS; Uncharacterized protein
STRINGBostr.0568s0574.1.p1e-173(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-134myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]