PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0285.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 106aa MW: 11364.1 Da PI: 11.1174 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.4 | 2.5e-20 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krie ks rqvtfskRrng++ KA LS+LC+ +av+++s +gkly Bostr.0568s0285.1.p 9 KRIEKKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYN 56 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.109 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-23 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-20 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MGRRKVEIKR IEKKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVSG SGKLYNSSSG 60 DKEKGGSQLN SWGAKKTSLE TGGERGMSPV NSSGNKVPET LPLLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
6bz1_A | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 64 | 1 | 64 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0285.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU980629 | 2e-60 | EU980629.1 Arabidopsis thaliana ecotype Gr-3 MAF2 gene, complete sequence; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | EU980630 | 2e-60 | EU980630.1 Arabidopsis thaliana ecotype Bs-1 MAF2 gene, complete sequence; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds. | |||
GenBank | HM487066 | 2e-60 | HM487066.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced. | |||
GenBank | HM487067 | 2e-60 | HM487067.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced. | |||
GenBank | HM487068 | 2e-60 | HM487068.1 Arabidopsis thaliana ecotype KZ-10 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced. | |||
GenBank | HM487069 | 2e-60 | HM487069.1 Arabidopsis thaliana ecotype Gr-3 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced. | |||
GenBank | HM487070 | 2e-60 | HM487070.1 Arabidopsis thaliana ecotype Sg-1 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced. | |||
GenBank | HM487071 | 2e-60 | HM487071.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced. | |||
GenBank | HM487085 | 2e-60 | HM487085.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 1 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487086 | 2e-60 | HM487086.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 2 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487087 | 2e-60 | HM487087.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 3 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487088 | 2e-60 | HM487088.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 4 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487089 | 2e-60 | HM487089.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 5 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487090 | 2e-60 | HM487090.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 variant 1 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487091 | 2e-60 | HM487091.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 variant 2 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487093 | 2e-60 | HM487093.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 variant 4 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487099 | 2e-60 | HM487099.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 1 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487100 | 2e-60 | HM487100.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 2 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487101 | 2e-60 | HM487101.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 3 (MAF2) mRNA, complete cds, alternatively spliced. | |||
GenBank | HM487102 | 2e-60 | HM487102.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 4 (MAF2) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010462383.1 | 6e-35 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X6 | ||||
Refseq | XP_019094207.1 | 6e-35 | PREDICTED: agamous-like MADS-box protein AGL31 isoform X5 | ||||
Refseq | XP_019094208.1 | 6e-35 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X7 | ||||
Refseq | XP_019094210.1 | 6e-35 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X8 | ||||
Swissprot | Q9FPN7 | 3e-32 | AGL31_ARATH; Agamous-like MADS-box protein AGL31 | ||||
TrEMBL | V4MJ09 | 6e-33 | V4MJ09_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.0568s0285.1.p | 1e-67 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 2e-26 | AGAMOUS-like 31 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0285.1.p |
Publications ? help Back to Top | |||
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