PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0282.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family EIL
Protein Properties Length: 541aa    MW: 61531.8 Da    PI: 4.4133
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0282.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3427.11.8e-1306142732354
                          XXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXX CS
                 EIN3  32 tgakksn..ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaisky...qakn 116
                          t+a++s      e+arrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pekgkpv+g+sdsLr+WWke+ +fd+++p+a+s+y   +a++
  Bostr.0568s0282.1.p  61 TSASSSAivPLAEAARRKKMARSQDSVLKYMMKIMEVCKAQGFVYGIVPEKGKPVTGSSDSLRRWWKENAQFDQTAPNAVSDYltlAAAQ 150
                          333333366889*************************************************************************9999* PP

                          XXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT.--TT--.-----GGG--HHH CS
                 EIN3 117 lilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg.lskdqgtppykkphdlkkaw 205
                          li+s++s +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWP+G+elwwge+g ++ ++g+ppy+kphdl+k w
  Bostr.0568s0282.1.p 151 LISSNDSLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPWWPNGTELWWGEQGgAAFEHGPPPYRKPHDLRKTW 237
                          **9977776...9********************************************************9******************** PP

                          HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXX.XXXXXXXXXXXXXXXX.......XX CS
                 EIN3 206 kvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrk.qspkvtlsceqkedve.......gk 287
                          kvsvLtavikhmsp++e++r+l+rqsk+lqdkm+akes+++++vlnqee+ +++++ +  + ++ +++   + c +ke +        ++
  Bostr.0568s0282.1.p 238 KVSVLTAVIKHMSPNLERVRRLARQSKCLQDKMMAKESDTWSRVLNQEEARLKRLKISDDEDKDgDQEPARFTCFDKESSLntcflvaQD 327
                          *******************************************************99954322223344444444443333469998555 PP

                          XXXX.XXXXXXXXXX....................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXX CS
                 EIN3 288 keskikhvqavktta....................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetel 341
                          +e+   +++++k  +                                    ++p+ +krk +++e++++ s+  ++tcq+s++++s+++l
  Bostr.0568s0282.1.p 328 QEQA-GSMRKDKMVDqessrddcflaaqdqepmkekradqewspnasflvdQEPFGNKRKGEFVEQEAMLSN--VYTCQNSSCPSSDVSL 414
                          5555.6688888777899999*************************************************99..7*************** PP

                          XXXXXXXXXXXXX CS
                 EIN3 342 ifadknsisqney 354
                          +f dkn ++++e+
  Bostr.0568s0282.1.p 415 GFVDKNLRTDHEI 427
                          *********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.9E-11663286No hitNo description
Gene3DG3DSA:1.10.3180.101.4E-67162293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.18E-58164289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVEIQDLEPL SPIQNDDDDD YEEGEDEFDR FGERSQEPHV ERSKPHVDNH NSVISSPSSS  60
TSASSSAIVP LAEAARRKKM ARSQDSVLKY MMKIMEVCKA QGFVYGIVPE KGKPVTGSSD  120
SLRRWWKENA QFDQTAPNAV SDYLTLAAAQ LISSNDSLDP NSYIHMLHEL QDTTLGSLLS  180
ALMQHCVPPQ RRFPLEKGLA PPWWPNGTEL WWGEQGGAAF EHGPPPYRKP HDLRKTWKVS  240
VLTAVIKHMS PNLERVRRLA RQSKCLQDKM MAKESDTWSR VLNQEEARLK RLKISDDEDK  300
DGDQEPARFT CFDKESSLNT CFLVAQDQEQ AGSMRKDKMV DQESSRDDCF LAAQDQEPMK  360
EKRADQEWSP NASFLVDQEP FGNKRKGEFV EQEAMLSNVY TCQNSSCPSS DVSLGFVDKN  420
LRTDHEIECL YGNQEPMNQS SGGSDGCVRS MTTSDDDYSA SSRAEDTRDY HNQDGNWLDY  480
LWFERLHDLN CSDQVFEDQT TAVDLNQLPD HSDSNQTMNE EDFSLWDMGY EDKDIYMSQD  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-571622921130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-571622921130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0282.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281975.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLR0GUK90.0R0GUK9_9BRAS; Uncharacterized protein
STRINGBostr.0568s0282.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]