PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0121.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 330aa    MW: 38074.6 Da    PI: 8.3199
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0121.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-1810103198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ffkv+     l+s+ +v+p  f+ ++ ++k+ +k++ l de gr W v+ + + + +r  ++++kGW++F+k++ L+ gDf+vF++dg+s
  Bostr.0568s0121.1.p  10 FFKVF--LPELSSDEMVIPPAFI-DI-LEKPLPKQVFLLDEIGRLWCVETKTEDTEERfcVLFKKGWESFAKDQSLEFGDFLVFSYDGDS 95 
                          88999..88999999********.66.3456999****************887777778999**************************99 PP

                          EE..EEEEE- CS
                   B3  89 efelvvkvfr 98 
                           f   v++f 
  Bostr.0568s0121.1.p  96 IF--SVTIFA 103
                          99..888876 PP
2B332.61.4e-102253011190
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ++ + l +p +f++++g+k   + ++ l de+g++W +++   ++ ++  +  + W+ F+k+++L     ++F+++  s++
  Bostr.0568s0121.1.p 225 GSFQKLDIPTTFLRSNGIK--LEEEIELCDENGKKWPLTI--VNHVRGlKFSYESWSCFCKSHKLMKTHKFLFEFIVASSG 301
                          4556799*********988..55589999***********..666666445558********************7744333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.1288105IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-209105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-209105IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-1710103IPR003340B3 DNA binding domain
CDDcd100171.40E-1610102No hitNo description
SMARTSM010191.6E-2010105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-15210310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-14211296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.362215314IPR003340B3 DNA binding domain
CDDcd100171.89E-6216310No hitNo description
SMARTSM010194.7E-9218314IPR003340B3 DNA binding domain
PfamPF023623.7E-8223300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVETGKDLEF FKVFLPELSS DEMVIPPAFI DILEKPLPKQ VFLLDEIGRL WCVETKTEDT  60
EERFCVLFKK GWESFAKDQS LEFGDFLVFS YDGDSIFSVT IFAKDGPKKD VGAVTTTESS  120
RVSVEKEPVD VFTKPERRKD CGQRINRKRK RDSVKEDPRV LVNDKPECVS TSKTKPEHRE  180
KTHRTVNRAG DPCDISWFPE KKHNGFEESV YKPKNPHFLR NITNGSFQKL DIPTTFLRSN  240
GIKLEEEIEL CDENGKKWPL TIVNHVRGLK FSYESWSCFC KSHKLMKTHK FLFEFIVASS  300
GRCNEIQVRI VSGRLPTTMT KNRYQVLAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1311053102At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136150RRKDCGQRINRKRKR
2137148RKDCGQRINRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0121.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266408e-84AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankCP0026888e-84CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866723.10.0putative B3 domain-containing protein At5g66980
SwissprotQ9FGD20.0Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLD7MLD40.0D7MLD4_ARALL; Transcriptional factor B3 family protein
STRINGBostr.0568s0121.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]