PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0096.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 592aa    MW: 65431.2 Da    PI: 4.5808
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0096.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.73.6e-1162265912374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +++++cA+ +s++d ++a+++L +++e +s+ gdp++R+ +yfteAL++rl+          +ps++s+++s++ + ++k++++++P+ 
  Bostr.0568s0096.1.p 226 LKAIYDCAR-ISDSDPNEASKALVQIRESVSELGDPTERVGFYFTEALSNRLSP--------NSPSSASSSSSEDLILSYKTLNDACPYS 306
                          578899**9.8999***************************************9........556666667799**************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          kf+hltaNqaIlea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fef
  Bostr.0568s0096.1.p 307 KFAHLTANQAILEATENSNKIHIVDFGIVQGIQWPALLQALATRSSGKPtQIRVSGIPAPSLGetPEPSLIATGNRLRDFAKVLDLNFEF 396
                          *********************************************77776**********99999999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                           + + + ++ l+ +++rv+p+E+laVn++lql++llde+ +  +   + L+l ksl+P+vv++ e e+++n+  F +r+ +a+++ysa+f
  Bostr.0568s0096.1.p 397 IP-ILTPIHLLNGSSFRVEPDEVLAVNFMLQLYKLLDETPTNVD---TALRLAKSLNPRVVTLGEYEVSLNRVGFSNRVKKAIKFYSAVF 482
                          **.799******************************88887777...******************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          +sle +l+r+seer+ vEr+l+gr+i+ ++  e++  +rer+e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s+ y++ e++ 
  Bostr.0568s0096.1.p 483 ESLEPNLGRDSEERVRVERVLFGRRISGLIGPEKTGiHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySNLYSIVESKP 572
                          *********************************99989****************************************99********99 PP

                 GRAS 357 slv.lgWkdrpLvsvSaWr 374
                           ++ l W+d pL+++S+Wr
  Bostr.0568s0096.1.p 573 GFIsLAWNDLPLLTLSSWR 591
                          9999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.706199569IPR005202Transcription factor GRAS
PfamPF035141.2E-113226591IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHHQDHQIF GINPLSLNPW PNTSLAFGLS  60
GSGFPDPFQV TGGGDSNDPT FPFPNLDHHH ATTAVSGFRL SDFGRGTGGG EFESDEWMET  120
LISGGDSVPA VAADAPDCDT WHNDPDYVIY GPDPFATYPS RLSVQQPSDL NRVIDTSSPL  180
PHPPPTLWPP PSPLSIPPLP HETITTEDPE TNDSEDDDFD LEPPLLKAIY DCARISDSDP  240
NEASKALVQI RESVSELGDP TERVGFYFTE ALSNRLSPNS PSSASSSSSE DLILSYKTLN  300
DACPYSKFAH LTANQAILEA TENSNKIHIV DFGIVQGIQW PALLQALATR SSGKPTQIRV  360
SGIPAPSLGE TPEPSLIATG NRLRDFAKVL DLNFEFIPIL TPIHLLNGSS FRVEPDEVLA  420
VNFMLQLYKL LDETPTNVDT ALRLAKSLNP RVVTLGEYEV SLNRVGFSNR VKKAIKFYSA  480
VFESLEPNLG RDSEERVRVE RVLFGRRISG LIGPEKTGIH RERMEEKEQW RVLMENAGFE  540
SVKLSNYAVS QAKILLWNYN YSNLYSIVES KPGFISLAWN DLPLLTLSSW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502245913375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0096.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0107000.0AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201478.10.0GRAS family transcription factor
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A178US250.0A0A178US25_ARATH; Uncharacterized protein
STRINGBostr.0568s0096.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]