PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0683.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 276aa    MW: 30630.1 Da    PI: 7.6518
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0683.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.3e-112566445
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         e k +r+v  skRr+ ++ KA  L+vL +a+vav + s+  k
  Bostr.0556s0683.1.p 25 ETKQQRSVACSKRRQSLFSKAADLCVLGGANVAVFVTSPAEK 66
                         77999*********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.4421466IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-171473IPR002100Transcription factor, MADS-box
CDDcd002661.26E-201598No hitNo description
PRINTSPR004045.2E-51636IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-1716107IPR002100Transcription factor, MADS-box
PfamPF003195.0E-112566IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-53651IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSSNVAECTT MKRGTKTKIE IKKRETKQQR SVACSKRRQS LFSKAADLCV LGGANVAVFV  60
TSPAEKSNVV YSFSGYSPAS DIADCYLNGK SPPKIVNPQS KLGFWWEDPD LYRYCDDLSE  120
LNIIEDHMMR TKKHLMACLE KKEKSQFVSN FDLNPKSSSP SSSQNCGGSS SSQFVSDFDQ  180
NPNSTSPTLS QIASFEQNSY SSLEKIFAQP SSSQVTCFDQ NPSFSVEDIY GESSSDQSRY  240
LVNKDPRLVD SLSEIEKENN RRRKTLGFEI ASQLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0683.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877286.21e-119uncharacterized protein LOC9311683
TrEMBLD7LME11e-114D7LME1_ARALL; Uncharacterized protein
STRINGBostr.0556s0683.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.15e-88M-type_MADS family protein