PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0275.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 376aa    MW: 42925 Da    PI: 6.4488
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0275.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.82.9e-2858142286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++e++ Li +r em++ ++++k++k+lW+++s+kmre+gf rsp++C++kw+n+ k++kk k+++ k +s+ s +++y++++e
  Bostr.0556s0275.1.p  58 WVQDETRSLISLRGEMDNLFNTSKSNKHLWKQISSKMREKGFDRSPTMCTDKWRNILKEFKKAKHQDDKASSGGSAKMSYYKEIE 142
                          ***********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-449119IPR009057Homeodomain-like
PROSITE profilePS500908.36250114IPR017877Myb-like domain
SMARTSM007174.8E-454116IPR001005SANT/Myb domain
PfamPF138376.5E-2056143No hitNo description
CDDcd122031.82E-2958121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFASDNNTSR DINMMIDVTS NGDLPQQRQH HNHQIILGDS SGGEDHEIKA PKKRAEAWVQ  60
DETRSLISLR GEMDNLFNTS KSNKHLWKQI SSKMREKGFD RSPTMCTDKW RNILKEFKKA  120
KHQDDKASSG GSAKMSYYKE IEDIFRERNK KVALYKSPAT PPSSAKVDSF LQFTDKGFED  180
TGISFTSVEA NGRPTLNLET QLDHDGLPLA IASADPVTAN GVPHWNWRDT PGNGGDGQPF  240
VGRIITVKFG EYTRRVGIDG TAEAIKEAIR SAFRLRTRRA FWLEDEEQVV RSLDRDMPLG  300
NYTLHVDEGI AVRVCHYDES DPLPVHQEEK IFYTEEDYRD FLARRGWTCL REFDVFRNID  360
NMDDLQPGVL YRGMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-4352140186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00003PBMTransfer from 484361Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0275.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291280.20.0trihelix transcription factor GT-4 isoform X2
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLR0HJX10.0R0HJX1_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.0556s0275.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein